G274272


Basic Information

Item Value
gene id G274272
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2621758 ~ 2630358 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311186
TAAAAGATGACAATGACATCCCTGAGTCCTTGTCATGGTGAAGAAGGTGGGAATTCAATTCAGAGAAATGTTTTCTTCAATGAATATACTGTGAGACTATATTTAGGTTTGTTGTTCAGAAAACATAGCCTAGATTTTGTGGGCTATTACTCTCAGTTAATTCATCAGTCAGGTAAGAGGAGAGTGTTTTCAGGCTCAGTCCTTAAAGCAGCATCAGGGCGGGGTTAAATCTGAGACGTGTGGTGTATTTCCACTAGATTTGTCTCTTTGTTTTTCATTCAAGCTTTAATGTTCATTGTGGTCCATGGCTGTATTTCTGGAATGTTCTACGGGAGCTTTGAAATTGCCTGGGACAGACGGATGCCAAAGAGTAGACCGAGAGGGACAGAGGAGGTGTCTCTCCGCTCCCCTCTTCTTCCTCTCTTTCTGTGTTTTCGCCTGTCTTCACAGCCTCGTTTTTTTCTCTATTTCACTCTCTGCCCTCCCTCCCTTCTCCCTCCTTCGCCTTGTGCACGGAATACTAAACGAGCCTCGTCTCCGCTCACGGGCTCCAGTGCGCGTGCAGTGCTAAACACATACTGATGTATGGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311186 True 591 lncRNA 0.46 2 2621758 2630358

Neighbor

gene id symbol gene type direction distance location
CI01000069_02540591_02547912 NA coding upstream 73736 2540510 ~ 2548022 (+)
CI01000069_02466489_02467309 NA coding upstream 154361 2465780 ~ 2467397 (+)
CI01000069_02454588_02465668 MYBPC2, MYBPC2A coding upstream 156077 2454588 ~ 2465681 (+)
CI01000069_02393010_02396796 AKT1S1 coding upstream 224026 2393010 ~ 2397732 (+)
CI01000069_02311794_02313206 NA coding upstream 306748 2311794 ~ 2315010 (+)
CI01000069_02818349_02821933 CLDNI coding downstream 187882 2818240 ~ 2821937 (+)
CI01000069_02857196_02860525 NA coding downstream 226064 2856422 ~ 2860562 (+)
CI01000069_02862381_02864927 PRF1.1 coding downstream 231296 2861654 ~ 2864993 (+)
CI01000069_02894136_02894807 COX6A2 coding downstream 263060 2893418 ~ 2894947 (+)
CI01000069_02903983_02905418 NA coding downstream 273625 2903983 ~ 2905654 (+)
G274231 NA non-coding upstream 38491 2581882 ~ 2583267 (+)
G274237 NA non-coding upstream 58632 2555699 ~ 2563126 (+)
G274238 NA non-coding upstream 69320 2549047 ~ 2552438 (+)
G274253 NA non-coding upstream 77568 2543964 ~ 2544190 (+)
G274250 NA non-coding upstream 83089 2538443 ~ 2538669 (+)
G274286 NA non-coding downstream 13177 2643535 ~ 2643776 (+)
G274271 NA non-coding downstream 24975 2655333 ~ 2656534 (+)
G274269 NA non-coding downstream 30010 2660368 ~ 2669042 (+)
G274267 NA non-coding downstream 39614 2669972 ~ 2670802 (+)
G274291 NA non-coding downstream 57117 2687475 ~ 2688038 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 449565 2031954 ~ 2040427 (+)
G273359 NA other upstream 2142677 477727 ~ 479081 (+)
G274270 NA other downstream 42266 2672624 ~ 2681158 (+)
G274603 NA other downstream 1169665 3800023 ~ 3803501 (+)
G274619 NA other downstream 1498770 4129128 ~ 4133378 (+)

Expression


Co-expression Network