G274267


Basic Information

Item Value
gene id G274267
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2669972 ~ 2670802 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311175
GGCTTTGGTAGAAGTTAGTGCAGTGTGTTCTGGAGACTGAATAAATCAGGACTTGTCACTGCTGCCTTGAGAGTGGAACCTGGTGAGAAGTAACATCGTGGCCTGTGGACGAGCTTCCGCCTTATTTGCAAATGCCGTTTAAGCTCTTTTTCGGAAGTGCAAATGCATGTTTATATAAATGTTTATAGCTCTGACTTTTTCTTCTCTCTTCAAATATATGTACTGTTTCACAGGTTTGTGACAACCATTAAATGAGACTTT
>TU311177
GGCTTTGGTAGAAGTTAGTGCAGTGTGTTCTGGTAAGTGCTTGGGTTTTTGTTCGTTTAACTGATAAATGTGTATTTCCTGTTTATTGTAATTATGATTGACAATTAAAAAAAGATTACTAGAGGTTAGTTAATAATTTTTTTTTTTTTGGGGGGAAGTTGGTTAGTCCGTGCTAAGTTACCTTTACCACGTGGCGCGTCACGTATATATGATACACTGCAAGTGAGCGGATAGCATGATAATTTACTTGCGTAAATACTGTCAAATTGTTTAATGCACGTTTGCACTTTATGAAATGGATTTGTTTTTGAGACTGAGTGGTTCAAACTCGTATTAATGTTAGCCTTACCTGCGGAGATCTGATCATCTGCTTTCTTTTGCAGGAGACTGAATAAATCAGGACTTGTCACTGCTGCCTTGAGAGTGGAACCTGGTGAGAAGTAACATCGTGGCCTGTGGACGAGCTTCCGCCTTATTTGCAAATGCCGTTTAAGCTCTTTTTCGGAAGTGCAAATGCATGTTTATATAAATGTTTATAGCTCTGACTTTTTCTTCTCTCTTCAAATATATGTACTGTTTCACAGGTTTGTGACAACCATTAAATGAGACTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311175 False 261 lncRNA 0.41 3 2669972 2670802
TU311177 True 612 lncRNA 0.37 2 2669972 2670802

Neighbor

gene id symbol gene type direction distance location
CI01000069_02540591_02547912 NA coding upstream 121950 2540510 ~ 2548022 (+)
CI01000069_02466489_02467309 NA coding upstream 202575 2465780 ~ 2467397 (+)
CI01000069_02454588_02465668 MYBPC2, MYBPC2A coding upstream 204291 2454588 ~ 2465681 (+)
CI01000069_02393010_02396796 AKT1S1 coding upstream 272240 2393010 ~ 2397732 (+)
CI01000069_02311794_02313206 NA coding upstream 354962 2311794 ~ 2315010 (+)
CI01000069_02818349_02821933 CLDNI coding downstream 147438 2818240 ~ 2821937 (+)
CI01000069_02857196_02860525 NA coding downstream 185620 2856422 ~ 2860562 (+)
CI01000069_02862381_02864927 PRF1.1 coding downstream 190852 2861654 ~ 2864993 (+)
CI01000069_02894136_02894807 COX6A2 coding downstream 222616 2893418 ~ 2894947 (+)
CI01000069_02903983_02905418 NA coding downstream 233181 2903983 ~ 2905654 (+)
G274269 NA non-coding upstream 930 2660368 ~ 2669042 (+)
G274271 NA non-coding upstream 13438 2655333 ~ 2656534 (+)
G274286 NA non-coding upstream 26196 2643535 ~ 2643776 (+)
G274272 NA non-coding upstream 39614 2621758 ~ 2630358 (+)
G274231 NA non-coding upstream 86705 2581882 ~ 2583267 (+)
G274291 NA non-coding downstream 16673 2687475 ~ 2688038 (+)
G274297 NA non-coding downstream 32781 2703583 ~ 2704763 (+)
G274300 NA non-coding downstream 34359 2705161 ~ 2709248 (+)
G274304 NA non-coding downstream 40581 2711383 ~ 2712372 (+)
G274303 NA non-coding downstream 50438 2721240 ~ 2721607 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 497779 2031954 ~ 2040427 (+)
G273359 NA other upstream 2190891 477727 ~ 479081 (+)
G274270 NA other downstream 1822 2672624 ~ 2681158 (+)
G274603 NA other downstream 1129221 3800023 ~ 3803501 (+)
G274619 NA other downstream 1458326 4129128 ~ 4133378 (+)

Expression


Co-expression Network