XLOC_010512 (isoc2)


Basic Information

Item Value
gene id XLOC_010512
gene name isoc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12793911 ~ 12809886 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020630
CATTTCAAAAAATGAATCATTCGACATTGAACTATCTGAAGAGTTCCAACACCAGTTTTACCAATAAGATCAGTGGGTGGACACATACATAAACACTGTCTGTCTTTACTTGATCTCTGCGGTCTAAGAGTCCTCCATACTGCACTGCAAACATGGCAGGAATTGGTAGACTGTCCACCAAAGGCTCTGTGCTGCTGCTGTGTGACATGCAGGAGAAGTTCAGACCCACTATTTTCCAGTTTACAAACGTCGTGAGCAATGCTGCAAGATTGTTACAGGCATGTCGAATCTTAAACATCCCTCAGATTTTAACCGAGCAGTACCCCAAGGGTCTAGGCCCCACTGTTCCTGAGCTGGGAGCAGAGGGCCTGAAGCCTCACACAAAGACCAGTTTCTCTATGATGACAGAGAGCGTGCAGAGCTCACTCAAGAGCATGGGAGACCCTCAGCAAGTCATACTGTGTGGCATCGAGGCTCAAGCATGCATTGCGTGCACAGCCTATGATCTCCTGGAGAGAGGAATGGAGGTTCATATTGTAGCTGACGCTGTGTCCTCTAGAAGTCAAACAGATCGTCTTTTTGCACTGTCACGGTTGAGGCAGAGTGGGGTGTTTCTCAACACTACAGAGGGAGTTTTACTGCAACTAGTGCAGGATGCCAAGCACCCCAACTTTAAAGAGatCCAGAAACTCTTGGCTCACCCCTCCCCTGATACAGGCCTGCTGGCCTTCTTCAGCTCTCTATAGGGCCAGTCAAACACAGACCACACCCTGCAGACataattacagaaattattaaaaatcaacacACACTGTTGTGTCAACCTGATGAACTCATGTGAGATCTGTGCATTTACATCCTTTCACAGAAACACagataattaaaatgtttaaataaaacaaatgcaaaaaa
>TCONS_00020631
AAAAAATGAATCATTCGACATTGAACTATCTGAAGGTTTGTGCACTGTAACAGCGAAAAAATTGTgctgtattttttgtaaaaaatgtcaATGGCTCACCTAGCTCGTATGTGTTAAAATACGCGTtttaaaataagcagtatcttAATTTGTATCTGCGTTTTTATGTCAGTCATGATTTTATTGTCGTGCTTGGTTTACTCATTAACGTTACCATATAACTTTTACCAGAGTTCCAACACCAGTTTTACCAATAAGATCAGTGGGTGGACACATACATAAACACTGTCTGTCTTTACTTGATCTCTGCGGTCTAAGAGTCCTCCATACTGCACTGCAAACATGGCAGGAATTGGTAGACTGTCCACCAAAGGCTCTGTGCTGCTGCTGTGTGACATGCAGGAGAAGTTCAGACCCACTATTTTCCAGTTTACAAACGTCGTGAGCAATGCTGCAAGATTGTTACAGGCATGTCGAATCTTAAACATCCCTCAGATTTTAACCGAGCAGTACCCCAAGGGTCTAGGCCCCACTGTTCCTGAGCTGGGAGCAGAGGGCCTGAAGCCTCACACAAAGACCAGTTTCTCTATGATGACAGAGAGCGTGCAGAGCTCACTCAAGAGCATGGGAGACCCTCAGCAAGTCATACTGTGTGGCATCGAGGCTCAAGCATGCATTGCGTGCACAGCCTATGATCTCCTGGAGAGAGGAATGGAGGTTCATATTGTAGCTGACGCTGTGTCCTCTAGAAGTCAAACAGATCGTCTTTTTGCACTGTCACGGTTGAGGCAGAGTGGGGTGTTTCTCAACACTACAGAGGGAGTTTTACTGCAACTAGTGCAGGATGCCAAGCACCCCAACTTTAAAGAGatCCAGAAACTCTTGGCTCACCCCTCCCCTGATACAGGCCTGCTGGCCTTCTTCAGCTCTCTATAG
>TCONS_00020632
GAATCATTCGACATTGAACTATCTGAAGGTTTGTGCACTGTAACAGCGAAAAAATTGTgctgtattttttgtaaaaaatgtcaATGGCTCACCTAGCTCGTATGTGTTAAAATACGCGTtttaaaataagcagtatcttAATTTGTATCTGCGTTTTTATGTCAGTCATGATTTTATTGTCGTGCTTGGTTTACTCATTAACGTTACCATATAACTTTTACCAGAGTTCCAACACCAGTTTTACCAATAAGATCAGTGGGTGGACACATACATAAACACTGTCTGTCTTTACTTGATCTCTGCGGTCTAAGAGTCCTCCATACTGCACTGCAAACATGGCAGGAATTGGTAGACTGTCCACCAAAGGCTCTGTGCTGCTGCTGTGTGACATGCAGGAGAAGTTCAGACCCACTATTTTCCAGTTTACAAACGTCGTGAGCAATGCTGCAAGATTGTTACAGGCATGTCGAATCTTAAACATCCCTCAGATTTTAACCGAGCAGTACCCCAAGGGTCTAGGCCCCACTGTTCCTGAGCTGGGAGCAGAGGGCCTGAAGCCTCACACAAAGACCAGTTTCTCTATGATGACAGAGAGCGTGCAGAGCTCACTCAAGAGCATGGGAGACCCTCAGCAAGTCATACTGTGTGGCATCGAGGCTCAAGCATGCATTGCGTGCACAGCCTATGATCTCCTGGAGAGAGGAATGGAGGTTCATATTGTAGCTGACGCTGTGTCCTCTAGAAGTCAAACAGATCGTCTTTTTGCACTGTCACGGTTGAGGCAGAGTGGGGTGTTTCTCAACACTACAGAGGGAGTTTTACTGCAACTAGTGCAGGATGCCAAGCACCCCAACTTTAAAGAG

Function

symbol description
isoc2 Predicted to be active in cytoplasm. Orthologous to human ISOC2 (isochorismatase domain containing 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070518-1 Predicted to be active in cytoplasm. Orthologous to human ISOC2 (isochorismatase domain containing 2).

Ensembl:

ensembl_id ENSDARG00000013371

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020630 False 912 mRNA 0.46 7 12793911 12809886
TCONS_00020631 False 936 mRNA 0.45 6 12794077 12809880
TCONS_00020632 True 863 mRNA 0.45 5 12795448 12809873

Neighbor

gene id symbol gene type direction distance location
XLOC_010511 foxj2 coding downstream 6882 12758494 ~ 12787029 (-)
XLOC_010510 sbk3 coding downstream 70173 12710904 ~ 12723738 (-)
XLOC_010509 mfap5 coding downstream 104831 12669765 ~ 12689080 (-)
XLOC_010508 NA coding downstream 227907 12563230 ~ 12566004 (-)
XLOC_010507 CU694256.1 coding downstream 261884 12524732 ~ 12532027 (-)
XLOC_010513 cacng8b coding upstream 72495 12882381 ~ 12953739 (-)
XLOC_010514 cacng7b coding upstream 153134 12963020 ~ 13004166 (-)
XLOC_010515 prkcg coding upstream 210890 13020776 ~ 13109749 (-)
XLOC_010516 grin2db coding upstream 369260 13179146 ~ 13388821 (-)
XLOC_010517 NA coding upstream 630851 13440737 ~ 13480372 (-)
XLOC_010626 CR392024.2 misc upstream 8085226 20895112 ~ 20895175 (-)
XLOC_010500 CR388102.5 non-coding downstream 540440 12253415 ~ 12253471 (-)
XLOC_010499 CR388102.4 non-coding downstream 543588 12250268 ~ 12250323 (-)
XLOC_010498 CR388102.2 non-coding downstream 545991 12247862 ~ 12247920 (-)
XLOC_010519 BX323458.2 non-coding upstream 712413 13522299 ~ 13542460 (-)
XLOC_010520 NA non-coding upstream 735407 13545293 ~ 13551327 (-)
XLOC_010521 NA non-coding upstream 747035 13556921 ~ 13564275 (-)
XLOC_010526 CR848741.1 non-coding upstream 858280 13668166 ~ 13671219 (-)

Expression


Co-expression Network