XLOC_010513 (cacng8b)


Basic Information

Item Value
gene id XLOC_010513
gene name cacng8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12882381 ~ 12953739 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020633
CGCGTTTGTAACTTCTATTTTTATAACCGCAATTATTTGACGACGCGAGACGAGCAAACCCCATCAGTTGTTTTCTTTTCTAACTCGTTTGCGGTCCATTTCTCTTGATATGCAATTATCTCTCCTCGTCTTCCTCTTTGGGAACGCGACGGTCTTCAAACAGGAGACAAACTAAACTGGTTTTTTATTAGCTATGAGCAGAAGTGACACAAAGTAAGCCCATATACAAACAACGGGTCACTGAGACCAACAGCAGCTTCTCCACTGTGGTTGATCTGTGAGAACAGAAGAAAAGAGGAAGCAAATAAGTGCAGGAGTACAGGAGGACAGGAGTGAGTGAGGACAGTCGATGGATGCTGCCCGGATCGAGGGGACAGCACATTCTCATCTGACGAGGAAAAGAAAGATTTCAAAATTGAGTCGAAGGACAGAAACTCGCCGTCAGGCATGGTGTGTGAGAAGGGCATTCAGATCCTTCTCACCATCGTGGGTGCATTCGCATCCTTTGGCCTGATGACGGTGGCTATCGGCACTGATTACTGGCTGTACTCGCGGGCGCTCATCTGCAACAGCACCGCCAACAACACACAAGAGGACCCCCATAATAAGGACAAGAAGGACCCCGGGGCCTTGACGCACTCCGGCCTGTGGAGGATCTGCTGTCTGGAGGGGGTGAAGCGTGGCGTGTGCTCGCAGATCAACCACTTCCCAGAGGATGCTGACTTTGATCATGATGGAGCAGAATACGTCCTGAGAGTGGTTCGGGCCTCCAACATCTTTCCCATCCTTAGTGCCATCCTGCTGCTAATGGGAGGCGTCTGTATCGCAGCCAGTCGCTTTTACAAGAGCAAAAGGAACATCGTGCTGGGAGCTGGCATTCTGTTTGTAGCCGCAGGCCTGAGTAACATCATCGGTGTGATCGTGTACATCTCCGCTGCTCTGGGTGACATTTCTCCCAAAAAGGACGAAGACAAGAAATGGCAGTACTCCTACGGCTGGTCCTTCTACTTCGGCGGGCTCTCCTTCATCCTGGCGGAGATGGTGGGGGTCCTTGCGGTGAACATCTACATTGAGAAGAACAAGGAGCTGCGCTGTCGCACCCGCACTGACATCTTCAAGAGCACCACTCATGCTATGCTACGCCTCCCCAGCTACCGATTCCGCCGCCGGTCTCGCTCCAGCTCCCGCTCCACCGACCCCTCGCGCTCTCGAGACCCGTCCCCAGTTGGAGGCCCGCCAGGGGGGAAGAACTTCGGGATGCCCCCATCAGCGTTACTCTCCCAGGGGCCCATCTCCGTGTCCACACTACCCAACCCTCACTCCCGCTCAGCTCTGCCAGGGGGCGATATTTCACTTTACACCCTCTCCCGTGACCCCAAACTGGGAGGTATAGGAGGGTTGGGCGCCCCTCCGTTGTATGGGACGGTGGATCGCGCCACTTTATACCAGCTGCACAACTGCTTCCCTAAGGAGGGCGGAGGGGGCATGATGATGAGCGGGACGCTTCCCTCTCTCAAATCCCACAATCCCTCAGGGGTCCAGAATTCTTCCAACTCCAATGCTCCGCTAAGCAACTCCGTCCCGTCCTCTCAACCTCCACCTTTTTCCTCGTCCACGGGGGAGCGGGATCGAGGGATGGGAACACTGGATAGGCTAGGTAAAGGTGACAGAGAGAGTAACTCCAACACACTAAATAGGAAAACCACACCAGTGTAGATAAACAGCGAGTGTTAGcgagagtttaaaaaaataataataataacaataaattgagGAGTAACACTCGGAAAATGTTGTGTTTCACATGAAAGAGGCCTGGATAAACATCTCATAGTAACAACAACACTCATGTTTATTTTCcagtagtgtttttttaaaacaataatcatGGGATACTgtgatgtttattatttttgcttgattttaatgGCGTGGATTTTCTTTGAAGATGGCGGTGTTGTTGTTATTAGGAGTACGTTTGAAACAAACGATTCTGGTTTTGAAGATGCCGACTGTGATTCCAAACGAGCGCTGCAGAAACGTGAGCGAATTCAAAACCGCGTGAGAATGAGATTATTTCGACTAACTTTGCGagaggtgttttatttattttggagaacGTTTTATTTTCTACCCTTTGATAACATGCAATTTAGTGTGTAATATCTGTATATCTGTCTTCCAGCTGAGTAAACAGAACAGCAGCGTAATTGATGGACTGAAACCACAAAGAGTTgaaatttaaaagatttttatataaaaaaaaaaaacctatcgtcatattatttttgttaaaatcacTGTTAGCAGTAGACGTAGCACTTGTTGAATTGAGAAACTTTGTTTTGGGGCATTAAAACATTCCCTCGCTTGGATAAAGAGGGACAGATGATATATTTGTATAAAGAAAATGATCGGGGAAAAAAGGGACTTCTACCCAAAACTGTGCTTTTCAAGTGGCGGGGACAATGACGGACAACTTTAATAATTGTTTACTTGACAGGTCTATGATGGTGAAAGGCTGAAAAAATTCATTTTGAAATGCAAATGTATATTACACATAactctatttgaaaaaaaatgttttggaaagGGCAGAATGGGTGGGTGGGGCTTTTTTTTTGAATATGTATGAGGTCACTGTCTTCCTTGAGCTCTGTTTGGGCTACACTCGTATGTTTGGGGCATGCCCTGTGTCGTTGGTGTTTTCCCTCCATTGTGTCATGTGATCATGACAGCATCCCAAAGGCAAAGctcccctccaaaaaaaaaaaaaaaaaacgaagacaAAAACGTTCACTGTGCTGCACTCGACTCCCTTTGAACCGTCTGCTTCTCAAAATGAGAGATTATATATGTGGACTTTCTGctaacttttaacttttattccATCATCCCAGCCAACAAGAGATCAACACAGGACATTACAAAATAAGAGAGCAAACAAATCACAATCTTCTGTGATCGGGggtctttttttaaatcattaaaaaatgaagAACAAAACACAGACAGCATTTATGTGGTCAGTTATAAATATTATG
>TCONS_00020634
GGGCAGTCTGTGATGTTTGCATATGTTTTTCATAATCTTTCTCTTTTCCTCATAGGCATGGTGTGTGAGAAGGGCATTCAGATCCTTCTCACCATCGTGGGTGCATTCGCATCCTTTGGCCTGATGACGGTGGCTATCGGCACTGATTACTGGCTGTACTCGCGGGCGCTCATCTGCAACAGCACCGCCAACAACACACAAGAGGACCCCCATAATAAGGACAAGAAGGACCCCGGGGCCTTGACGCACTCCGGCCTGTGGAGGATCTGCTGTCTGGAGGGGGTGAAGCGTGGCGTGTGCTCGCAGATCAACCACTTCCCAGAGGATGCTGACTTTGATCATGATGGAGCAGAATACGTCCTGAGAGTGGTTCGGGCCTCCAACATCTTTCCCATCCTTAGTGCCATCCTGCTGCTAATGGGAGGCGTCTGTATCGCAGCCAGTCGCTTTTACAAGAGCAAAAGGAACATCGTGCTGGGAGCTGGCATTCTGTTTGTAGCCGCAGGCCTGAGTAACATCATCGGTGTGATCGTGTACATCTCCGCTGCTCTGGGTGACATTTCTCCCAAAAAGGACGAAGACAAGAAATGGCAGTACTCCTACGGCTGGTCCTTCTACTTCGGCGGGCTCTCCTTCATCCTGGCGGAGATGGTGGGGGTCCTTGCGGTGAACATCTACATTGAGAAGAACAAGGAGCTGCGCTGTCGCACCCGCACTGACATCTTCAAGAGCACCACTCATGCTATGCTACGCCTCCCCAGCTACCGATTCCGCCGCCGGTCTCGCTCCAGCTCCCGCTCCACCGACCCCTCGCGCTCTCGAGACCCGTCCCCAGTTGGAGGCCCGCCAGGGGGGAAGAACTTCGGGATGCCCCCATCAGCGTTACTCTCCCAGGGGCCCATCTCCGTGTCCACACTACCCAACCCTCACTCCCGCTCAGCTCTGCCAGGGGGCGATATTTCACTTTACACCCTCTCCCGTGACCCCAAACTGGGAGGTATAGGAGGGTTGGGCGCCCCTCCGTTGTATGGGACGGTGGATCGCGCCACTTTATACCAGCTGCACAACTGCTTCCCTAAGGAGGGCGGAGGGGGCATGATGATGAGCGGGACGCTTCCCTCTCTCAAATCCCACAATCCCTCAGGGGTCCAGAATTCTTCCAACTCCAATGCTCCGCTAAGCAACTCCGTCCCGTCCTCTCAACCTCCACCTTTTTCCTCGTCCACGGGGGAGCGGGATCGAGGGATGGGAACACTGGATAGGCTAGGTAAAGGTGACAGAGAGAGTAACTCCAACACACTAAATAGGAAAACCACACCAGTGTAG

Function

symbol description
cacng8b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG8 (calcium voltage-gated channel auxiliary subunit gamma 8).

GO:

id name namespace
GO:0051968 positive regulation of synaptic transmission, glutamatergic biological_process
GO:0019226 transmission of nerve impulse biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome biological_process
GO:0098970 postsynaptic neurotransmitter receptor diffusion trapping biological_process
GO:2000311 regulation of AMPA receptor activity biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0099590 neurotransmitter receptor internalization biological_process
GO:0098839 postsynaptic density membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0016247 channel regulator activity molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100921-72 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG8 (calcium voltage-gated channel auxiliary subunit gamma 8).

Ensembl:

ensembl_id ENSDARG00000070626

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020633 False 3044 mRNA 0.46 6 12882381 12953739
TCONS_00020634 True 1326 mRNA 0.56 4 12883709 12914288

Neighbor

gene id symbol gene type direction distance location
XLOC_010512 isoc2 coding downstream 72495 12793911 ~ 12809886 (-)
XLOC_010511 foxj2 coding downstream 95352 12758494 ~ 12787029 (-)
XLOC_010510 sbk3 coding downstream 158643 12710904 ~ 12723738 (-)
XLOC_010509 mfap5 coding downstream 193301 12669765 ~ 12689080 (-)
XLOC_010508 NA coding downstream 316377 12563230 ~ 12566004 (-)
XLOC_010514 cacng7b coding upstream 9281 12963020 ~ 13004166 (-)
XLOC_010515 prkcg coding upstream 67037 13020776 ~ 13109749 (-)
XLOC_010516 grin2db coding upstream 225407 13179146 ~ 13388821 (-)
XLOC_010517 NA coding upstream 486998 13440737 ~ 13480372 (-)
XLOC_010518 si:dkeyp-69b9.3 coding upstream 551325 13505064 ~ 13516745 (-)
XLOC_010626 CR392024.2 misc upstream 7941373 20895112 ~ 20895175 (-)
XLOC_010507 CU694256.1 non-coding downstream 350354 12524732 ~ 12532027 (-)
XLOC_010500 CR388102.5 non-coding downstream 628910 12253415 ~ 12253471 (-)
XLOC_010499 CR388102.4 non-coding downstream 632058 12250268 ~ 12250323 (-)
XLOC_010498 CR388102.2 non-coding downstream 634461 12247862 ~ 12247920 (-)
XLOC_010519 BX323458.2 non-coding upstream 568560 13522299 ~ 13542460 (-)
XLOC_010520 NA non-coding upstream 591554 13545293 ~ 13551327 (-)
XLOC_010521 NA non-coding upstream 603182 13556921 ~ 13564275 (-)
XLOC_010526 CR848741.1 non-coding upstream 714427 13668166 ~ 13671219 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021947 NA coding PESF01000879.1 PESF01000879.1 183 ~ 1082 (-)