G274342


Basic Information

Item Value
gene id G274342
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2798384 ~ 2800201 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311259
GAAACAGGATTTGTGGTTGGAAATCAAATTGCATTGAAAAAGCAAAATCGTGAGACCATTTTTTTTGTTTTGTTTTTTCTTGAAACCTCTAATTGCCTTATTTCTACTTATGGTACAGTTGAAATAATGTACTACAGTGCATTAAGGAAAAACATCCCTGATTGCTTTATAAGAGAAAGAAAAAAATTACATCTAAATATCCTGCTCTCTGTTAAGTAAAACAAATAAAAGTACAATTATATATTAATAAACAACAATAACTCTACTACTAATAAAGTCTTAATCTCAATGTTGCTGCAAAGCAAAATGTGCACAATCTACCAGCCTTGCTGAGGAGATCAGAGCTAATAGAAAGGCCATCAACCAAAGGAAATACAATAATTTTTCTCTTTTTTTCACGGCACACATACTCCATTCAAAAATCCCCCCCCCCAAAAAACATATACAAGATCTATCAGAAGAGCGCGATATTATGACTATATATATTATGGTTATATTTGATTTGAATCTGACCATAAGATGCTAGATGAGGAATGGCACAGATTTCTCTGTTACGTTGCCACTGTTGTGTTCTGTATATGAAAGCCAGTTCTGTGATGCAGGAAAGCTGTTAGTGTGTGTAGGAGTGCGGTCACTACATCCGTCTATTACTCATTACTCTAATTTTTCAGGGCTAGTCTCCTATAGTGGCTAAAAATGTTACATCAGCAATGGAAGAATCACCTTGACCTGAAGAACTCAATTATGGGATTTCTTTGAGCATCTAAAGCATAGTTAACTGTAGATAATTATTATTATTTTTATTTTTTTTTAAAAACTAAGCCATCATATAGGTTACGTCAGAGGTGTCCAGTCCTGCTCCTGGAAGGCCATTGTCCTGCAAAGTTTAGCTCTAACCCCAATTAAACACACCTGAACCAGCTAATCAAGGTCTTACTAATAGGCATACTAGAAACTTCCAGGCAGGTGTGTTGAAGCAAGTTGGAGCTAAACTCTGCAGGACACAGTTTGGACACCCCTAGTTTATGTATTTTTCATATTTTAAAAGACATTTAATCTACATGCTTAACCAAAGATGACCTGCTTGATTTAAACAATCTTAGATGTTGCTATCTTGCTTTAAATTACAAAACTATTAATCTCAGAACATATAAAGCAGGCCACTACAGGGAGAGAGAGGAAAAAAAAAAAAAAAACTAATGTCAGTGTCTTTGAGCCAGCAGAGGACACCATTGTATGGCTTTGCAATATTCTTATCCCCTATGAACACATTGAAGAACTAGTGTTTTGTGAAATGCGCCATCTGCTGGAACTAGTGATACGAGTTTGAGGCAAACAAAATTCTTAAATCCTAATTACAGTAGCAACTCCTCTGAGATTTAAATGGATCAAACTTTAAATCCTGTCTGGCAACTCAAAACACACAGTTTGAAATGGAGGGAGGGGAATGAAAAGGACAACAGATCTCTAGAGGAAAGGGACAAGTTGAGCTGGCAAAGCAAGATCCAGGAGCTGAGTGCGATACCCAGTGCTTTAAAACCCAGATAATGCTAACTACTAGCAAAAAGTGAAAAAAGAAGGACAGACAGAAAAATAGGACATATAAGAGTAATGTTTGCGTTATTAAAAATGTCAGAGGAGAAAAGCATAATTGGAAGGCAAAGGGGAAGAGACTGAGTTTACTGTTGAGAGGAAGCAGACAGAGAGAAAGCGGCACCAAGCAAGTTGGAGACAAACGGAAAATGATTAGGTGCACAATCTCGGTCCTTCTCAGCAAATGTCAACTTTGGTCAACCCTAAAAGACTACATTCAATCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311259 True 1818 lncRNA 0.37 1 2798384 2800201

Neighbor

gene id symbol gene type direction distance location
CI01000069_02540591_02547912 NA coding upstream 250362 2540510 ~ 2548022 (+)
CI01000069_02466489_02467309 NA coding upstream 330987 2465780 ~ 2467397 (+)
CI01000069_02454588_02465668 MYBPC2, MYBPC2A coding upstream 332703 2454588 ~ 2465681 (+)
CI01000069_02393010_02396796 AKT1S1 coding upstream 400652 2393010 ~ 2397732 (+)
CI01000069_02311794_02313206 NA coding upstream 483374 2311794 ~ 2315010 (+)
CI01000069_02818349_02821933 CLDNI coding downstream 18039 2818240 ~ 2821937 (+)
CI01000069_02857196_02860525 NA coding downstream 56221 2856422 ~ 2860562 (+)
CI01000069_02862381_02864927 PRF1.1 coding downstream 61453 2861654 ~ 2864993 (+)
CI01000069_02894136_02894807 COX6A2 coding downstream 93217 2893418 ~ 2894947 (+)
CI01000069_02903983_02905418 NA coding downstream 103782 2903983 ~ 2905654 (+)
G274339 NA non-coding upstream 18100 2779556 ~ 2780284 (+)
G274391 NA non-coding upstream 21357 2776816 ~ 2777027 (+)
G274390 NA non-coding upstream 22235 2775858 ~ 2776149 (+)
G274388 NA non-coding upstream 24780 2772336 ~ 2773604 (+)
G274387 NA non-coding upstream 28068 2770009 ~ 2770316 (+)
G274317 NA non-coding downstream 4912 2805113 ~ 2811452 (+)
G274395 NA non-coding downstream 12244 2812445 ~ 2812851 (+)
G274396 NA non-coding downstream 14470 2814671 ~ 2814906 (+)
G274400 NA non-coding downstream 33865 2834066 ~ 2834300 (+)
G274399 NA non-coding downstream 34506 2834707 ~ 2840042 (+)
G274270 NA other upstream 117226 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 626191 2031954 ~ 2040427 (+)
G273359 NA other upstream 2319303 477727 ~ 479081 (+)
G274603 NA other downstream 999822 3800023 ~ 3803501 (+)
G274619 NA other downstream 1328927 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 1755108 4555269 ~ 4558480 (+)

Expression


Co-expression Network