G274317


Basic Information

Item Value
gene id G274317
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2805113 ~ 2811452 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311234
AGGTGCTTCCAGCTCTAGCAGGATGGGCTGGCTGAGGAAAATTTCCCGAGATTTGAGACAGAGGCCACGGATTTCGCTCTCTGTCAGCTGTACGTTCTTTCCTGGCCTGGAGCCTTTAACTTCCAGGAGACGCTGTATTATGGAGTCAATGTTTAATTTGTCCGGCTCCGCCATTTTAGTGGATTTTGTAGGGTTTATTCAAACAGGTCGAGTCTGCCGTTTTCTGTTATCTTGGTGATTGGTCAAAAAATAAGGCCCCAATCCGAATAAGCAAAGCGTATAAAGGATATCGTTATGGAAATGTGAATTTACTGGCTATATTTCCTTTGTCGTTTGGTTGATCGCTAGCTGATAACGCCGTTAGCCTGATGGCGCTAGCTATTGCCTACCCGTATTTAAACACCAGGAAATGGTTAATATGGTACAAAAAACGCCCAGATATACCCCTTCACCTCTTCTTTTGATTCTTTTTGTGTCCCGTGAGCATCTAAAATATTCAAACTGCCCCTATTTTCCGTATTCTCACAATCCCCCTTCTCTCATCGTCTACGGAACTTTAAAAAAAAGACAGTGTTGTGATGTAGAGCGAAATCAGTGGAGGCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311234 True 605 lncRNA 0.44 2 2805113 2811452

Neighbor

gene id symbol gene type direction distance location
CI01000069_02540591_02547912 NA coding upstream 257091 2540510 ~ 2548022 (+)
CI01000069_02466489_02467309 NA coding upstream 337716 2465780 ~ 2467397 (+)
CI01000069_02454588_02465668 MYBPC2, MYBPC2A coding upstream 339432 2454588 ~ 2465681 (+)
CI01000069_02393010_02396796 AKT1S1 coding upstream 407381 2393010 ~ 2397732 (+)
CI01000069_02311794_02313206 NA coding upstream 490103 2311794 ~ 2315010 (+)
CI01000069_02818349_02821933 CLDNI coding downstream 6788 2818240 ~ 2821937 (+)
CI01000069_02857196_02860525 NA coding downstream 44970 2856422 ~ 2860562 (+)
CI01000069_02862381_02864927 PRF1.1 coding downstream 50202 2861654 ~ 2864993 (+)
CI01000069_02894136_02894807 COX6A2 coding downstream 81966 2893418 ~ 2894947 (+)
CI01000069_02903983_02905418 NA coding downstream 92531 2903983 ~ 2905654 (+)
G274342 NA non-coding upstream 4912 2798384 ~ 2800201 (+)
G274339 NA non-coding upstream 24829 2779556 ~ 2780284 (+)
G274391 NA non-coding upstream 28086 2776816 ~ 2777027 (+)
G274390 NA non-coding upstream 28964 2775858 ~ 2776149 (+)
G274388 NA non-coding upstream 31509 2772336 ~ 2773604 (+)
G274395 NA non-coding downstream 993 2812445 ~ 2812851 (+)
G274396 NA non-coding downstream 3219 2814671 ~ 2814906 (+)
G274400 NA non-coding downstream 22614 2834066 ~ 2834300 (+)
G274399 NA non-coding downstream 23255 2834707 ~ 2840042 (+)
G274403 NA non-coding downstream 33278 2844730 ~ 2845169 (+)
G274270 NA other upstream 123955 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 632920 2031954 ~ 2040427 (+)
G273359 NA other upstream 2326032 477727 ~ 479081 (+)
G274603 NA other downstream 988571 3800023 ~ 3803501 (+)
G274619 NA other downstream 1317676 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 1743857 4555269 ~ 4558480 (+)

Expression


Co-expression Network