G274412


Basic Information

Item Value
gene id G274412
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2879639 ~ 2882570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311332
CCTCCAAGATAACGGCCAGCACCTGTCTTTCCCGGCTTGCCCGCCCCATAGCCACGGGCTCCGAGAATACCAGCCACTCCGGTCTTTGCACCGATACCAGGACCTCGACTCGCTAATCTTCCCAGGGCTCCATTCTGTGGCCTAACTCCTCCTTGTATTGTGTTCTGTACCAGCCACAGGACCAGTGAGGTCTGTAGGAGCGCCCGGACCAGCATGTTTGCAGATTGACAGACAGACTTGGTGACGGCGAACAGCCAGAAATGCACACAGGTGAAGTGCAGGTGAAGTGAGAGTCAAGCAGCCTCAGTTGAAAGCAGCACCACTGGTCAATCTGCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311332 True 337 lncRNA 0.57 5 2879639 2882570

Neighbor

gene id symbol gene type direction distance location
CI01000069_02862381_02864927 PRF1.1 coding upstream 14646 2861654 ~ 2864993 (+)
CI01000069_02857196_02860525 NA coding upstream 19077 2856422 ~ 2860562 (+)
CI01000069_02818349_02821933 CLDNI coding upstream 57702 2818240 ~ 2821937 (+)
CI01000069_02540591_02547912 NA coding upstream 331617 2540510 ~ 2548022 (+)
CI01000069_02466489_02467309 NA coding upstream 412242 2465780 ~ 2467397 (+)
CI01000069_02894136_02894807 COX6A2 coding downstream 10848 2893418 ~ 2894947 (+)
CI01000069_02903983_02905418 NA coding downstream 21413 2903983 ~ 2905654 (+)
CI01000069_02927711_02933564 NA coding downstream 44867 2927437 ~ 2933579 (+)
CI01000069_02982693_02987269 CLEC19A coding downstream 99993 2982563 ~ 2987527 (+)
CI01000069_02991356_02994073 NA coding downstream 107542 2990112 ~ 2994319 (+)
G274356 NA non-coding upstream 24042 2853420 ~ 2855597 (+)
G274403 NA non-coding upstream 34470 2844730 ~ 2845169 (+)
G274399 NA non-coding upstream 39597 2834707 ~ 2840042 (+)
G274400 NA non-coding upstream 45339 2834066 ~ 2834300 (+)
G274396 NA non-coding upstream 64733 2814671 ~ 2814906 (+)
G274414 NA non-coding downstream 7193 2889763 ~ 2889973 (+)
G274433 NA non-coding downstream 123679 3006249 ~ 3008232 (+)
G274355 NA non-coding downstream 198925 3081495 ~ 3081791 (+)
G274467 NA non-coding downstream 218205 3100775 ~ 3101359 (+)
G274468 NA non-coding downstream 220729 3103299 ~ 3104275 (+)
G274270 NA other upstream 198481 2672624 ~ 2681158 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other upstream 707446 2031954 ~ 2040427 (+)
G273359 NA other upstream 2400558 477727 ~ 479081 (+)
G274603 NA other downstream 917453 3800023 ~ 3803501 (+)
G274619 NA other downstream 1246558 4129128 ~ 4133378 (+)
CI01000069_04556116_04558002 PYY, PYYA other downstream 1672739 4555269 ~ 4558480 (+)

Expression


Co-expression Network