G275699


Basic Information

Item Value
gene id G275699
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 2992504 ~ 3078168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU312791
CATTAAAAAGTTGATTTATTTCACTAATTCCATTCAAAAAGTGAAACTTGTATATTATATTCATTCATTACACTCAGACTGATATATTTCAAATGTTTATTTCTTTTAATTTTGATGATTATAACTGACAACTAAGGAAAATCCCAAATTCAGTATCTCAGAAAATTAGAATATCGTGAAAAGGTTCAATATTGAAGACACCTGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTCAGTCTAGTTCTGTAGGCTACACAATCATGGGGAAGACTGCTGACTTGACAGTCGTCCAAAAGACGACCATTGACATCTTGCACAAGGAGGGCAAGACACAAAAGGTCATTGCAAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCACATTAATAGAGAGGCGAAGGGAAGGAAAAGATGTGGTAGAAAAAAGTGTACAAGCAATAGGGATAACCGCACCCTGGAGAGGATTGTGAAACAAAACCCATTCAAAAATGTGGGGGAGNNNNNNNNNNNNNNNNCTGCAGCTGGAGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU312791 True 565 TUCP 0.37 2 2992504 3078168

Neighbor

gene id symbol gene type direction distance location
CI01000069_02944962_02977798 SMG1 coding downstream 14706 2944833 ~ 2977798 (-)
CI01000069_02934862_02943383 ARL6IP1 coding downstream 49121 2934092 ~ 2943383 (-)
CI01000069_02911501_02921826 TCEB2, ELOB, TCEB2.L coding downstream 69817 2911481 ~ 2922687 (-)
CI01000069_02906527_02909006 NA coding downstream 83498 2906049 ~ 2909006 (-)
CI01000069_02895817_02903000 NA coding downstream 89504 2895690 ~ 2903000 (-)
CI01000069_03242808_03248880 NA coding upstream 163651 3241819 ~ 3248880 (-)
CI01000069_03298533_03302831 CCDC47 coding upstream 220029 3298197 ~ 3302831 (-)
CI01000069_03315611_03353645 KCNH6, KCNH6A coding upstream 237344 3315512 ~ 3353733 (-)
CI01000069_03365921_03371931 GFAP coding upstream 287295 3365463 ~ 3371944 (-)
CI01000069_03382399_03395900 MAP3K3 coding upstream 303964 3382132 ~ 3395900 (-)
G275658 NA non-coding downstream 97538 2892738 ~ 2894966 (-)
G275681 NA non-coding downstream 223192 2768956 ~ 2769312 (-)
G275672 NA non-coding downstream 351970 2640335 ~ 2640534 (-)
G275671 NA non-coding downstream 352466 2639787 ~ 2640038 (-)
G275670 NA non-coding downstream 352755 2639512 ~ 2639749 (-)
G275843 NA non-coding upstream 141641 3219809 ~ 3220041 (-)
G275856 NA non-coding upstream 183128 3261296 ~ 3261504 (-)
G275814 NA non-coding upstream 202744 3280912 ~ 3284191 (-)
G275772 NA non-coding upstream 228321 3306489 ~ 3312896 (-)
G275876 NA non-coding upstream 279053 3357221 ~ 3357421 (-)
CI01000069_02589498_02621318 SYT3 other downstream 362188 2589469 ~ 2621641 (-)
CI01000069_01645966_01647142 NA other downstream 1345178 1644522 ~ 1647326 (-)
CI01000069_00952894_00955774 NA other downstream 2036714 952361 ~ 955790 (-)
G275178 NA other downstream 2046700 926923 ~ 945804 (-)
CI01000069_00041648_00043198 EHD3 other downstream 2949132 41648 ~ 43441 (-)
CI01000069_03415853_03417644 LIMD2 other upstream 334805 3412973 ~ 3417644 (-)
CI01000069_03768812_03787588 BRSK1 other upstream 687505 3765673 ~ 3787588 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other upstream 726448 3804616 ~ 3807180 (-)
CI01000069_04932463_04940554 NA other upstream 1861353 4932144 ~ 4941471 (-)

Expression


Co-expression Network