Item | Value |
---|---|
gene id | G275981 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000069 |
NCBI id | null |
chromosome length | 5329268 |
location | 4087379 ~ 4087745 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU313080 | True | 367 | lncRNA | 0.35 | 1 | 4087379 | 4087745 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000069_03986480_03988243 | NA | coding | downstream | 98767 | 3985177 ~ 3988612 (-) |
CI01000069_03972492_03982847 | TSPAN4B | coding | downstream | 104422 | 3972090 ~ 3982957 (-) |
CI01000069_03939251_03942780 | RCN3 | coding | downstream | 144284 | 3939204 ~ 3943095 (-) |
CI01000069_03871972_03884153 | NA | coding | downstream | 203226 | 3871925 ~ 3884153 (-) |
CI01000069_03804630_03807180 | PRMT1.S, PRMT1 | coding | downstream | 280199 | 3804616 ~ 3807180 (-) |
CI01000069_04129986_04133876 | MYLPFB, MYLPF, MLC-2, MYLPFA | coding | upstream | 41980 | 4129725 ~ 4133923 (-) |
CI01000069_04140312_04141990 | NA | coding | upstream | 51869 | 4139614 ~ 4142844 (-) |
CI01000069_04160575_04161329 | NA | coding | upstream | 72241 | 4157983 ~ 4161329 (-) |
CI01000069_04171520_04172634 | NA | coding | upstream | 83590 | 4171335 ~ 4172634 (-) |
CI01000069_04174676_04182006 | MYST2, KAT7 | coding | upstream | 86046 | 4173791 ~ 4182006 (-) |
G275980 | NA | non-coding | downstream | 241 | 4086835 ~ 4087138 (-) |
G275979 | NA | non-coding | downstream | 1651 | 4084839 ~ 4085728 (-) |
G275825 | NA | non-coding | downstream | 5958 | 4080282 ~ 4081421 (-) |
G275975 | NA | non-coding | downstream | 34314 | 4052828 ~ 4053065 (-) |
G275972 | NA | non-coding | downstream | 49670 | 4037485 ~ 4037709 (-) |
G275982 | NA | non-coding | upstream | 216 | 4087961 ~ 4088358 (-) |
G275992 | NA | non-coding | upstream | 47343 | 4135088 ~ 4135400 (-) |
G275770 | NA | non-coding | upstream | 55423 | 4143168 ~ 4215690 (-) |
G275808 | NA | non-coding | upstream | 119847 | 4207592 ~ 4209649 (-) |
CI01000069_03768812_03787588 | BRSK1 | other | downstream | 318159 | 3765673 ~ 3787588 (-) |
CI01000069_03415853_03417644 | LIMD2 | other | downstream | 661005 | 3412973 ~ 3417644 (-) |
G275699 | NA | other | downstream | 1009211 | 2992504 ~ 3078168 (-) |
CI01000069_04932463_04940554 | NA | other | upstream | 851776 | 4932144 ~ 4941471 (-) |