G275982



Basic Information


Item Value
gene id G275982
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4087961 ~ 4088358 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU313081
TCTAACCTGTGTGGTGGAAATTCACCAATAAAATTAAAGAGCTCAATGGTAAAAATGTTTTTTTATCTGACTCCAGACTTTAGAAAGTCAAGGACAGCAAGTTGCTTCTCACAGCATTTGTAGATTAGACTTGAAACATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTCAGAGTCTTCCACCAAGTGTGTGACAGAAAGAAGGGGCCAGTGCTCAGTAGTTATCTGAGGCCTTGCAATTGAAAGATAACTTACAACATCTTCACACTTATCAGTCAAAACCTAACCCTCACATGTATAACCTCTGTTGAGCAGCGACCTGATTGAAACTTTCAGTTCGTCTCCTTACAGTCTTAAACAGTTAACATGCTTTTGAAACAATAACTTTTTAC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU313081 True 398 lncRNA 0.39 1 4087961 4088358

Neighbor


gene id symbol gene type direction distance location
CI01000069_03986480_03988243 NA coding downstream 99349 3985177 ~ 3988612 (-)
CI01000069_03972492_03982847 TSPAN4B coding downstream 105004 3972090 ~ 3982957 (-)
CI01000069_03939251_03942780 RCN3 coding downstream 144866 3939204 ~ 3943095 (-)
CI01000069_03871972_03884153 NA coding downstream 203808 3871925 ~ 3884153 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 coding downstream 280781 3804616 ~ 3807180 (-)
CI01000069_04129986_04133876 MYLPFB, MYLPF, MLC-2, MYLPFA coding upstream 41367 4129725 ~ 4133923 (-)
CI01000069_04140312_04141990 NA coding upstream 51256 4139614 ~ 4142844 (-)
CI01000069_04160575_04161329 NA coding upstream 71628 4157983 ~ 4161329 (-)
CI01000069_04171520_04172634 NA coding upstream 82977 4171335 ~ 4172634 (-)
CI01000069_04174676_04182006 MYST2, KAT7 coding upstream 85433 4173791 ~ 4182006 (-)
G275981 NA non-coding downstream 216 4087379 ~ 4087745 (-)
G275980 NA non-coding downstream 823 4086835 ~ 4087138 (-)
G275979 NA non-coding downstream 2233 4084839 ~ 4085728 (-)
G275825 NA non-coding downstream 6540 4080282 ~ 4081421 (-)
G275975 NA non-coding downstream 34896 4052828 ~ 4053065 (-)
G275992 NA non-coding upstream 46730 4135088 ~ 4135400 (-)
G275770 NA non-coding upstream 54810 4143168 ~ 4215690 (-)
G275808 NA non-coding upstream 119234 4207592 ~ 4209649 (-)
G276042 NA non-coding upstream 438724 4527082 ~ 4527880 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 318741 3765673 ~ 3787588 (-)
CI01000069_03415853_03417644 LIMD2 other downstream 661587 3412973 ~ 3417644 (-)
G275699 NA other downstream 1009793 2992504 ~ 3078168 (-)
CI01000069_04932463_04940554 NA other upstream 851163 4932144 ~ 4941471 (-)

Expression



Co-expression Network