Gene
RNA
| Item | Value |
|---|---|
| gene id | G274671 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 4139130 ~ 4140762 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU311634 | True | 1633 | lncRNA | 0.37 | 1 | 4139130 | 4140762 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000069_04113962_04124908 | TBC1D10B | coding | upstream | 13923 | 4113081 ~ 4125207 (+) |
| CI01000069_04089580_04103908 | HSD3B7 | coding | upstream | 34471 | 4089580 ~ 4104659 (+) |
| CI01000069_04055396_04078361 | SETD1A | coding | upstream | 60390 | 4055396 ~ 4078740 (+) |
| CI01000069_04047810_04052352 | NA | coding | upstream | 86484 | 4047576 ~ 4052646 (+) |
| CI01000069_04042802_04047285 | NA | coding | upstream | 91773 | 4042802 ~ 4047357 (+) |
| CI01000069_04143761_04147538 | CD2BP2 | coding | downstream | 2999 | 4143761 ~ 4147679 (+) |
| CI01000069_04151875_04159107 | NA | coding | downstream | 11113 | 4151875 ~ 4159191 (+) |
| CI01000069_04165021_04170544 | NA | coding | downstream | 23366 | 4164128 ~ 4170555 (+) |
| CI01000069_04203202_04214241 | NA | coding | downstream | 62440 | 4203202 ~ 4214325 (+) |
| CI01000069_04230190_04235064 | NA | coding | downstream | 88607 | 4229369 ~ 4235081 (+) |
| G274760 | NA | non-coding | upstream | 136907 | 3998983 ~ 4002223 (+) |
| G274748 | NA | non-coding | upstream | 206726 | 3932068 ~ 3932404 (+) |
| G274746 | NA | non-coding | upstream | 216559 | 3922288 ~ 3922571 (+) |
| G274743 | NA | non-coding | upstream | 255373 | 3883537 ~ 3883757 (+) |
| G274737 | NA | non-coding | upstream | 265150 | 3873776 ~ 3873980 (+) |
| G274659 | NA | non-coding | downstream | 118 | 4140880 ~ 4141167 (+) |
| G274669 | NA | non-coding | downstream | 43440 | 4184202 ~ 4192064 (+) |
| G274653 | NA | non-coding | downstream | 80660 | 4221422 ~ 4370572 (+) |
| G274775 | NA | non-coding | downstream | 116682 | 4257444 ~ 4306259 (+) |
| G274779 | NA | non-coding | downstream | 127453 | 4268215 ~ 4268822 (+) |
| G274619 | NA | other | upstream | 5752 | 4129128 ~ 4133378 (+) |
| G274603 | NA | other | upstream | 335629 | 3800023 ~ 3803501 (+) |
| CI01000069_02894136_02894807 | COX6A2 | other | upstream | 1244242 | 2893418 ~ 2894947 (+) |
| G274270 | NA | other | upstream | 1457972 | 2672624 ~ 2681158 (+) |
| CI01000069_04556116_04558002 | PYY, PYYA | other | downstream | 414547 | 4555269 ~ 4558480 (+) |
| G274953 | NA | other | downstream | 783705 | 4924467 ~ 4926687 (+) |
| CI01000069_05046565_05048523 | NA | other | downstream | 905465 | 5045967 ~ 5049408 (+) |
