G274825


Basic Information

Item Value
gene id G274825
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4431014 ~ 4433247 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311806
TTGGGTGAATTATCCCTTTAAAGAACAGATACAAATTTAAGACAGTATTTATTGATAATCTTCCCCTCTACTGCAACTCAGAAATGGACTACAAACGACACATCAACACTATTTGGCACTGATTCTTACAAGTGTTGTGACCGCACATCATTGACATTAAGCCTAATACAGTGACATTAAAAGGTGCCTCATTTGATTAGCAATTTAATTTTTGATTCTTTTTTGTAATTATGCATCTTGACAGCCCCAGTCTCTATTCAGGATTCTTTTCTGTTCCTCAAAAGAAAGAAAGTCATACAGGTTTGGAAGGACATAAGGGTGAGAAAATGATTAATTTTAATTTTTTGGGTGAATTATCCCTTTAATACACTTTAAAAAACAAAAAAGTGAAACACCACAGCATTCTTCTGATTAACTTTGCCCTGTTCGGTTTGTGTTCAAGTAACAGTTTGGTTCTCTACATTACCTTCCTGAACACTGATCAGCACAAAGAAGAGAGGTCAATTGTGTTCGTTTTTTAGCCTCTTATGATAATATGGTTGTACAATAGCATCTCTGTTTAGGATCTGTAAATGAGTACAAGACTTCCTAATCAAATTCATTTAAAGTTCAGGAAATATTTAGCATGATGATAAGAGCTTTCTACTCAACTAATTATAAATGGAAGAAAGCACATGAACAAAAACACATCAACGTTCTCAATTCTTCCTGATCCACGGCAGAAGAAAAATACTCCTGTAAATGTCAATACACCATTTTTACTTTGTCTTCAAGCCAAGACACTGAGACTCAAAAGGGCTGAGCTCAGCAAATTCATGCAGAGACTTTTCCCCTCTTCCTTCGACTTTTTAAGTTTCAGATATCTCTTAACTTACAGTAAACTTAACTCAAAGACGAGATTGTAATACAAGACTTCTAAAGAAGTGCTATCCATATGTACTTCTGTTGATCAGTTTGATTGTTCCTGTGATTATGTGATTTAATCAAGGAAAACAAGAACTAATCTGAATGGCTAAATATTAGCTTGCGCTTTGCAAAACTCAAATGATTAATAGGCGTCTACTGAGAACATTTCTCTGTTGACCCATCTGTACATAAACACTACAGTTTAAAGGTTTGTGCTTGGTCAGATTTTTTTAAATGTTTTCGGAAGAAGTCTCTTACGCTCACCAATACTGCATTTATGAAACCAAAAATACAATAAAACTAGTAATATTGTGAAATATTATTACAATTTCAAATAACTGTTTTCTACTTTAATATATTTTAATATGTAATTTATTCCTGTGATGGCAAAGCTGTATTTTAAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCGGATATGATTTGATGCTCAAGGAACATTTCTTATTATCAATAATATTTCATAGAAACTGCAATACATTGTTTTTCAGGATTCTGTGATAGAAAGATCAAAAGAACAGAATTTATTTGAAATATATATTTTTGTGACATTATAAATGTCTTCATTGTCAGTTTTGATCAATTTAATGTGTCCTTGCTGATAGTATATTAATTTAAAAAACATTTTTTTTTACTCACCCCAAACTATTAACCGCTATTAAAATGTATGTTCATTCCGTGTCAGTTGTTGAAATGTAAAGTTTGGGTGTCCTTACATGTGAAAAATATAGCTAGATTCAAACATTTAATATATAACCTCAGACTTCAGCCCCAAAGTACATGTAAATTAGTCATTTTGTACAATTTTATTTTAGCAGTTTCTAATTGTCAGTCTTTATTTAAAAAAAGCACAGTCATTGTCAGCTGCCACAGGGCAGAGCACAAAATCAAAGCAGATATGCTAATAGCAACTCTTGGACACAATTAGCGAAAAGGAACTCGCTCTATGTGCCACGAATGATTAGCAAATGAACTTTTCCTTTTGATGTAGACGAAAGAGGCGGCTTATTCCTCCCTCCTTCCTGCCAGCCTCCTCAATCGGTTCTTTCCAGTACAGTACATTCCAGTGAGCTGGTGGACTGGCATGATTGATACAGACATGGTGGCAAATGGGTTTGGCAATAGGCTTACCAGCCGTTTATTACATGAATTGTTCCCAAATCAAGGCATCACAGTTCCATTCTTTAGCAAATGAATATGGAATGGGCATTCGTTCCATATTCAAAATGGAAATTTTCTGAATGTATGAGGAAATACAAGCCGAAATCAATGATGGATTTGTTGTCACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311806 True 2234 lncRNA 0.34 1 4431014 4433247

Neighbor

gene id symbol gene type direction distance location
CI01000069_04412903_04419976 NA coding upstream 9826 4411235 ~ 4422342 (+)
CI01000069_04230190_04235064 NA coding upstream 195933 4229369 ~ 4235081 (+)
CI01000069_04203202_04214241 NA coding upstream 216689 4203202 ~ 4214325 (+)
CI01000069_04165021_04170544 NA coding upstream 260459 4164128 ~ 4170555 (+)
CI01000069_04151875_04159107 NA coding upstream 271823 4151875 ~ 4159191 (+)
CI01000069_04527086_04527715 NA coding downstream 93754 4527001 ~ 4527814 (+)
CI01000069_04556116_04558002 PYY, PYYA coding downstream 122022 4555269 ~ 4558480 (+)
CI01000069_04562461_04568806 MPP2A coding downstream 129214 4562461 ~ 4568896 (+)
CI01000069_04612170_04623197 GTPBP1, GTPBP1L, GTPB1 coding downstream 178923 4612170 ~ 4623451 (+)
CI01000069_04773976_04774606 NA coding downstream 340729 4773976 ~ 4774959 (+)
G274824 NA non-coding upstream 1596 4428648 ~ 4429418 (+)
G274823 NA non-coding upstream 2618 4428090 ~ 4428396 (+)
G274775 NA non-coding upstream 124755 4257444 ~ 4306259 (+)
G274826 NA non-coding downstream 491 4433738 ~ 4433938 (+)
G274827 NA non-coding downstream 827 4434074 ~ 4434668 (+)
G274828 NA non-coding downstream 1917 4435164 ~ 4436147 (+)
CI01000069_04425809_04438936 NA non-coding downstream 5318 4423943 ~ 4439161 (+)
G274831 NA non-coding downstream 6073 4439320 ~ 4439744 (+)
G274619 NA other upstream 297636 4129128 ~ 4133378 (+)
G274603 NA other upstream 627513 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 1536126 2893418 ~ 2894947 (+)
G274270 NA other upstream 1749856 2672624 ~ 2681158 (+)
G274953 NA other downstream 491220 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 612980 5045967 ~ 5049408 (+)

Expression


Co-expression Network