G274681


Basic Information

Item Value
gene id G274681
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4492640 ~ 4497549 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311644
TTTATGGCGCAATGCAACGCAAGGGACAAAGACGTTCATCTTCATGTGTTTCTTTAAGGGTTTTACTGTGTGAACTGTCTAACAGCTAAAGCTAACTAACTTATTAAAGCACCACAGATAAACAATTTATAAACAACTAGTTGTCTATCATGATTCATTCCCAGAGTTACGAAACATGCTAAAACTGAAGACTTAGACAATAAGAAAACTTTTTTTGGCAACATACGTTGTAAAGCAGTACTTTGAATATTGTTGGTTGTATGATAAAATACTTGTTCCTCATTTGCAAGTCAATTTGAATAAATGCGTCTGCTAAATGAGTAAATGGGCAGAGGGGAAAATAATTTGAAGGAGAACTGAAAAATAGTATCATAGTCATAGAAACATGGGCCGAGGCAGAAATGCTGAATCTAGTCACAGTCCATGCCAACAAATAAACACATGTAAAGAATACACATGTGGCCATAAATAGAGAGAAAGCCACTGGCGAGGTGCTATCAGACAAGTTGTCTATTTACCAAACAGACAGTGCAAGTCAGGCAGACTATAAAAAAAGGAGGTGAAAATGTTTCATTTCAAAAAAGGTCAGCAATTTTCATCACCCTTACATTCCCTGCAATCCTGGTAAAAATCCACTTTAGTCACAAATCCCATTCTCACCTTTTCCACCACAATGTAACGAACTGGACCACAAAAGCAGCAAGTCTAATGAAGAAGCTCTGCCAGGCGTCTGAGCAGTATGAGATTCCTAAATGAGCACCAAGAAGATGAAAAATTGTGACCAGAATGAGGACAAAATGAGAAAGATGCCAAAGCACTGTGTTCAGGGCTGAGCACCGGGCAGCGGGAAACTACTTCTAGGAATTCTGTATAGAAAAACTACAGCAAAAAAAAAAAAAAAAAAATGTTTAACTTATCTCACTCACATGGGCTCAAGGAAAGATTTCTGCTACTTTTGTCATATGATCGCCTTATTTTCTTTACGATTATGGAGGTCAAAGTCACCTATTTGCAGCTGCACTTTTTCAGATTGAAAAACAACGACTGTCAAAAGATCAGTATCAGAGTGACTCACATTCAGTGCGTGTACATGGAAAAATGAGCACATGAGAAAACTGTAGTAATGAGTAATATTAACAATGAAACAGCACATTGCACAAAGAAAACTCAAATACAAAAGGCTGAGCAATTGCAACTCCATTTGATCAATCAATTTTATAGGTTTGCTCTGGTTGACTATATTAATTGCTTTTTTAATCATTCTCTCATTGTAAGCATCAAAATGTGTTTGTTTGTCTGTATGTATCTGTCACTGTATTGACACCCAACCGCATCTCTCATCAATTATTTATCTGATATGATTAATTGTAAAGAATTTTGGAAGTTTTCAAATTCTTCTTTGCATGAAAAGCCCTATCCATCGACATATAAACATTAATGAACGCATGTACATAGAGCACATCAAATATGGTAAATGCAAGCTCAAAGATGCCTCCTTGACACACAATAATCAATAAGGTTTGTTTTCATGGGTCAAACACACTTTGAGCTTCTGTTTAACATATTTGATTTGCTCTGTGTATGCATTCACCAGTCTTTATACAATATAAGACAAAAAATCTGTGAAAAAAAGTTACTGGTAATTTTATCATTTTACCAGGACATTATCATTAGAAGTTTACGGACATTTTCATTCACCCTAATATACAACATTCCTTCATACTAACGTCATCATGAAATCAAAATTGACAATTCTTATTTTTAGATGTAATATTGTAGTATTTATTATAAATGATTTATCTGTGCATGTCGTTATTTTTTTAATTTTTTTATTCATGTGCCCTCGTAATCTTTAATCAAAATAACTTCCCCTCTCTTGCAGCGCCATCTCTTCTCTTCTGATGATGTGTTTACTGGTGCGAGGGCGGGACAACCTGTCACTCACATGACATCACAGCAGTAGCAAACCACAACCATCCAATCAATTCAAGTCCCGCCCTACACTTTTCTTGCTCAAAAAGCCGCTTCACTCGCATAAATGTCACAATAGGGAAGAAAAGACTATAGCAACTTCTGATTCATCCCGACTTTAACATAGTATTTTAGTCCTCATTTCTACAGGCTTTTCTTGTGTATGTAAATAACAACCTATAATATAATCTTTTCATCATTCAAAGCGACCATGTCTTAGATTAAATCGCTTAATTCTTGTGGATCATTTATACAAAGTATATACTGTATGTAGCTTAAAAATGTTGAACTAATCTTTAAATGAATGGACAATCTTCATTTGTCTTCCAAAGATGAACGAAAGAACTAACCCTTTAAAGACAGGGATCCAAAATACGTAATCATCGGTTCCATCCATTTACAATTTTGCAGACAATTTGAAATGATTAATGAGAGAGTACGCCAAAATCAATCCACTGGAGAGAGAGGGAGGTAAAATATAGAAATGGAAAGAGGCGTGTCAACTAGTCATATCCAGCAGTGTGAAAAAGCAGATTTCTGAAAAAAAGGCAAGGTGACGGCATTGGATAGCACCCTGATTCAGTCAGCTTTGTGTTCCCCTCCCTGCTATTTTTGAACAACAGAGAACATTAGAGAGCCCTGATGGAAGGTTAGAGACAAAGACAACAGGAGGTGATACCATGAGCGTGCTTTTATGAACGGAAAAATCAAAATGTCAGGTTTTGTGGCATATGTCTCTGCAGATGATGGGCATGAATGTAGCAGTGCTTGCTTTGAGGAAGCAAATACTGTACCCATTCCTCTTTCTATTGCAGGCAGATGGTCGAAGAACTTCCCATTTAACTGCGAAAACAGAACTAACCGAAAACACCTCGCTTCTTACACCATATGCTGAATAGTTTCAATGCATCAGAAGCATGACTCATTTCATCCTTGTACTATTGCCGTTAAATGAATAGTACAATGCAAAATTTAAATTCATTTACTCCCCCTCAAGTTGTTCTAAATGATTTTTTCTTCCGAAGAACACAAAAAGAGATATTAGACAGCATGACAGTCTCAGTCTTCCCATTCACTTTCACGGTAAAAAGATGTAATGAAAGTGAATCGTGACCGTGTGCCTAATATTCCTAGTACTCCAGAGTGCAGTCTGGATGATAGGGTGGGGCGACATGTGTCACTCCTCCCACATCCAATTTCATTGGTTTATAATAGAGCAAATCTTATTGCCGTAGACGCTCAAACCCTGAGCTTGTGCATTCCTTTGTGTACGATTTTGTTAATGATTTGCCTGTATTACAGAAATATTAAGTGCTAACTCTAGAATCGTATCTTATTATCTGTTTAGTAATTTTAGTTAGGATCTATTGGCTAATGTTTTATTGTACTTAAGAAACAGAATAGATTATTGTTTAAAAATGAATGCTTTCATGATGGCACCTGTGGGTTATTCAAGCTGAATAGAGCTGTTACATTAGCACTTCATTCATTTGTCTTCATATTTCCATCAGGATTGGTGGATCAGCACAAACCTGGGATTTTACAAAAATTATGATAATTCACTGTACTTCAGTAAGTTTTTTAAACGATATGATTTGCTCAATGTTTCACTTGCATTACTTGGTACAAAGTGCTAATAAAATGTTTTCATGGCAAACTCATGTTTCCTTGTTTACCTCGTAATAAAATATTTGGCCTTAAATATTGGTTCTGTATGTTACAGTTTTTAAAGATTCCTATTTTATAATAAATATGTGTCAATGGGTTAATGTATATCTGTGACATCAGGTTTTAAAAATCCAAATATGTTATAATCTGCTTTTGTACGGGATGAAATTAGTTTCAATTATCAACACTCACTATACTGTATAGCCATATAGCTGCTAGCAAATAAATAAAAAAAAATCACTTGGAGCTGTAAATCTGTGCAATATAGGTAACTTGAGGACTTATTTCAGACTTTTACTGTGATTAATACCTTTTTTATTTATCAAGCGATGTCTATAATTAACTACTAAACAAAAGCTAAAAGTGGATTATAGAGAAATATATAGTCTACATAGGTTATTTTTAAACAAGCCACAAAACTAGTTAATTTGTACATAACCATAAAAGTAAAATATAAAAATACCCAGCAGAGAAGTGATACATTGGGTTAGTTCACCCGAAAATGACAATTCTGTCATCATTTACTCAGTGAACTGTCCCTTTAAATAGCAGCTTCGGGCAGATGAACAGATCCTTTGCTCAGTATTCGGATATTTATATTGCATGTTACCCCCAAATGCTCTTAAACAGGATTCCAACTGAGTTAATCCGAGCAGGAAATTACTTATATAGAGGCATTTGTTGCTTTTGTTTGTACAACGAAGTGACCCAGTTAAATTCCTTGTGACATAACAGAGTATTGTACATTTAAATCATGCTCAACATGTTATAAATGTCTATACAGGCAAATATATAACAGATTTTTAAATCCAAAAACAATATACCATCTGAATAAAGTCGACGCAAGACGAAATTCAATTCAAAACATGACGCTCAGCTAGTGCAGCGTAGCCACGCTTTGCATGAAAGACCTGCTGCAAAAGCTCTCAATGACACATTGCTCATTCAGGTGTGAGAACAATACAGCGCATTTTATTACGTTGCTGCCGCAGACCTGTCATTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311644 True 4643 lncRNA 0.35 2 4492640 4497549

Neighbor

gene id symbol gene type direction distance location
CI01000069_04425809_04438936 NA coding upstream 53648 4423943 ~ 4439161 (+)
CI01000069_04412903_04419976 NA coding upstream 71452 4411235 ~ 4422342 (+)
CI01000069_04230190_04235064 NA coding upstream 257559 4229369 ~ 4235081 (+)
CI01000069_04203202_04214241 NA coding upstream 278315 4203202 ~ 4214325 (+)
CI01000069_04165021_04170544 NA coding upstream 322085 4164128 ~ 4170555 (+)
CI01000069_04527086_04527715 NA coding downstream 29452 4527001 ~ 4527814 (+)
CI01000069_04556116_04558002 PYY, PYYA coding downstream 57720 4555269 ~ 4558480 (+)
CI01000069_04562461_04568806 MPP2A coding downstream 64912 4562461 ~ 4568896 (+)
CI01000069_04612170_04623197 GTPBP1, GTPBP1L, GTPB1 coding downstream 114621 4612170 ~ 4623451 (+)
CI01000069_04773976_04774606 NA coding downstream 276427 4773976 ~ 4774959 (+)
G274691 NA non-coding upstream 2271 4487410 ~ 4490369 (+)
G274860 NA non-coding upstream 6288 4485687 ~ 4486352 (+)
G274859 NA non-coding upstream 7126 4484790 ~ 4485514 (+)
G274858 NA non-coding upstream 8194 4483880 ~ 4484446 (+)
G274857 NA non-coding upstream 9101 4480464 ~ 4483539 (+)
G274649 NA non-coding downstream 93319 4590868 ~ 4625092 (+)
G274626 NA non-coding downstream 101575 4599124 ~ 4602018 (+)
G274893 NA non-coding downstream 173040 4670589 ~ 4671103 (+)
G274897 NA non-coding downstream 187627 4685176 ~ 4696072 (+)
G274937 NA non-coding downstream 269373 4766922 ~ 4767140 (+)
G274619 NA other upstream 359262 4129128 ~ 4133378 (+)
G274603 NA other upstream 689139 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 1597752 2893418 ~ 2894947 (+)
G274270 NA other upstream 1811482 2672624 ~ 2681158 (+)
G274953 NA other downstream 426918 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 548678 5045967 ~ 5049408 (+)

Expression


Co-expression Network