G276042


Basic Information

Item Value
gene id G276042
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4527082 ~ 4527880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU313149
ATAGCATATCTGAAGAAGGCATGAAGCAGTTTGTGCATGAAGTCATATACCAATTAACATCTTTATTAAAACCCTTTTAGAACAAAAAATTTACAGTTACAGGAAGCACATCTCTGGATTCATGAAAACAATTGTACAATGCATAATATGCCATCAGTTTGTGTTCTAGTTTGATTTCTCAGCCCCATCCTCCATTTTGTTTGTGCTTTCCTTGTTGATGGGGAAATTCAGGGATGTTCTGAAACGGATGGGAATGACATGCTCCTCTGAGGACTCATCTTTGGATTCTGGTGACTCAATATGCAGAAGTCCATCTTCTCCAAGTGAACAGGTCAAGGAGGTTGGATCCAGGTGATCAGGAAGCTGCACGGCTTGAACAAATCCTTGTGGCTGGGCTTCTGCAGCATGCGCAGTGCTGGTAGATGATGAGGAAGCGTCTTTCTTGGCCAGCACCTCCAGCCTCCTCCCAGATACTGTCATCTGTGTTGGTACTGAAGAGCCTGGAGAAGGCAGGGGTCCTCTGACCGTCTAGACTCTGGAAGAACTCTTCACTGAGTTCACTCAGCAAGCTGTCTCTGATCTCGTTCCTCAGGTTCTGCATTATTTGGGCCCTTCGTTGGAGGAAATCCTCTCTGAAGCTGGAAAGAACCATACTGCCCCTGGGCCACAAAAAGTGGGAGTTCTCAAAGAAAGGGTCGTCCATGAAGAGGCTCTCGGCAGAAGACATTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU313149 True 731 lncRNA 0.46 2 4527082 4527880

Neighbor

gene id symbol gene type direction distance location
CI01000069_04444787_04454292 NA coding downstream 72790 4444226 ~ 4454292 (-)
CI01000069_04387255_04404199 RARA, RARAA, RARAB coding downstream 122739 4386997 ~ 4404343 (-)
CI01000069_04380270_04382951 NA coding downstream 144131 4380172 ~ 4382951 (-)
CI01000069_04370591_04375147 NA coding downstream 151935 4369896 ~ 4375147 (-)
CI01000069_04350619_04363291 NA coding downstream 163400 4350452 ~ 4363682 (-)
CI01000069_04574882_04576116 NA coding upstream 46486 4574366 ~ 4576128 (-)
CI01000069_04579172_04593867 NA coding upstream 50729 4578609 ~ 4594023 (-)
CI01000069_04595809_04598174 NA coding upstream 67870 4595750 ~ 4598174 (-)
CI01000069_04599199_04600481 RL23, RPL23, RPL23.L coding upstream 71289 4599169 ~ 4600481 (-)
CI01000069_04603992_04607459 NA coding upstream 75219 4603099 ~ 4607586 (-)
G275770 NA non-coding downstream 311392 4143168 ~ 4215690 (-)
G275808 NA non-coding downstream 317433 4207592 ~ 4209649 (-)
CI01000069_04160575_04161329 NA non-coding downstream 364667 4157983 ~ 4161329 (-)
G275992 NA non-coding downstream 391682 4135088 ~ 4135400 (-)
G275982 NA non-coding downstream 438724 4087961 ~ 4088358 (-)
G276052 NA non-coding upstream 27329 4555209 ~ 4557664 (-)
G276064 NA non-coding upstream 85974 4613854 ~ 4624902 (-)
G276129 NA non-coding upstream 137290 4665170 ~ 4665413 (-)
G276133 NA non-coding upstream 141452 4669332 ~ 4669811 (-)
G276094 NA non-coding upstream 171391 4699271 ~ 4703469 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 720005 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 757862 3765673 ~ 3787588 (-)
CI01000069_03415853_03417644 LIMD2 other downstream 1100708 3412973 ~ 3417644 (-)
G275699 NA other downstream 1448914 2992504 ~ 3078168 (-)
CI01000069_04932463_04940554 NA other upstream 411641 4932144 ~ 4941471 (-)

Expression


Co-expression Network