G274649


Basic Information

Item Value
gene id G274649
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4590868 ~ 4625092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311612
GTCGCTTCATAACATTATGGTTGAACCACTGTACTCACATGAACTGTTTTAAATACGTCTTTAGTAGCTTTCTGGGCACTGAAAGTGTTAATTGTCTTGCTCTCAATGCAGGCCTCACTGAGCCATCAGGTTTTATCAAAAATATCTCAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTAGAACGACATGAGGGTGAGTAATAAATGACATAATTTTCATTTTTGGGTGAACTAACCCTTTAAGACACTGTGACTTGCAAAGTTTTTTGGCAGCTAGTTTAGTGTGAAATGCGAATTGGCAATTAAATGTACTTCAAAATCTAATAACACTCATTGCTAATTTTTACCTCATATTTCAGTCTATTAACAGTTTCCCAAATCCTTGGTCAACCTTGTGTTATCAGGCCTGACAGACTTTGCTCAGGTTCTTGGAGCATATTAAAATTGTCAAATAAGATATTTTCAGATTACCCAGTGAAAGGGGGTGAAAAACAGAATGTTGATCTTAAGTTTCAAAATGTTGTGTAATAGTTCACCATGGGGAAACATTGCAAAACAGTGCCATTTGTTCTTGGATAAGAAAAAAAATGTTTTTTATGAATTAACCAGTTCCTCCTCCCCCCCCCCCAATATGACACCTGGACCATTCTCTGCGTTTACATGTGAAACTTTCCACAACCAATATCCAAATAAACTGATGTTGACAATTTCAGCAGAGTGTGATTCTCTGTCTCAGAGTTTGTCCATCTAGTCTAGAGGTCTTCAACCTTTGTCAGACTAAAGACCCCTTTGAGATCTTTTTGGTTACAAACATTCTTCCAAATATCTTCCTTTGTGTTCAGCAGTGAACAATTGTGAATGATTCTTCCATGCAGTTTTATTTTCTAAAATTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311612 True 903 lncRNA 0.37 2 4590868 4625092

Neighbor

gene id symbol gene type direction distance location
CI01000069_04562461_04568806 MPP2A coding upstream 21972 4562461 ~ 4568896 (+)
CI01000069_04556116_04558002 PYY, PYYA coding upstream 32511 4555269 ~ 4558480 (+)
CI01000069_04527086_04527715 NA coding upstream 63054 4527001 ~ 4527814 (+)
CI01000069_04425809_04438936 NA coding upstream 151876 4423943 ~ 4439161 (+)
CI01000069_04412903_04419976 NA coding upstream 169680 4411235 ~ 4422342 (+)
CI01000069_04773976_04774606 NA coding downstream 148884 4773976 ~ 4774959 (+)
CI01000069_04776672_04785162 NA coding downstream 150278 4775370 ~ 4785432 (+)
CI01000069_04791495_04792375 NA coding downstream 166259 4791351 ~ 4792680 (+)
CI01000069_04917103_04918567 ALKBH7 coding downstream 292011 4917103 ~ 4918901 (+)
CI01000069_04981836_04982608 NA coding downstream 355867 4980959 ~ 4983096 (+)
G274681 NA non-coding upstream 93319 4492640 ~ 4497549 (+)
G274691 NA non-coding upstream 100499 4487410 ~ 4490369 (+)
G274860 NA non-coding upstream 104516 4485687 ~ 4486352 (+)
G274859 NA non-coding upstream 105354 4484790 ~ 4485514 (+)
G274858 NA non-coding upstream 106422 4483880 ~ 4484446 (+)
G274893 NA non-coding downstream 45497 4670589 ~ 4671103 (+)
G274897 NA non-coding downstream 60084 4685176 ~ 4696072 (+)
G274937 NA non-coding downstream 141830 4766922 ~ 4767140 (+)
G274938 NA non-coding downstream 142440 4767532 ~ 4767747 (+)
G274948 NA non-coding downstream 203656 4828748 ~ 4831017 (+)
G274619 NA other upstream 457490 4129128 ~ 4133378 (+)
G274603 NA other upstream 787367 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 1695980 2893418 ~ 2894947 (+)
G274953 NA other downstream 299375 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 421135 5045967 ~ 5049408 (+)

Expression


Co-expression Network