G276071


Basic Information

Item Value
gene id G276071
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4791382 ~ 4792803 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU313192
TTCAAGAGAGCGCATACAACTATGCACAAGCCTAGCTGACTTCGTCAGATTATTTTCCCCGGATAAACCAGTCTAAAAGATAATGCGTCACACACAAAAATTAGATGTCAGAGAGTCTTTTATTGTACAAAATTGAGGTAGATAGATCATAACATCATAATGTCTGTTTGTAGTAGCTTATGTCATGTTGACCTGCTGGAAAATCCCTGGTCGGTCAGCTACAATGTCCCAGCTGGTTGCTGATCTACTAGCTTGTACCAGTAGGAAACCAGCTACAGTGTTCCAAAACACAGCTTAATATGGGTTTTTCCAGCAATGAGACCACATAAAATTCCAGTGTGATAACTGGACAATGACAGCACCATGGACAAATACAACGCATAGTACAACCAGAAAACATTCTTGGCCATTAAATAAATAGATTAAGTTCATGTGAATGTCCGTTGAAGTTCTCTCAGTAATACTTCTCGTAGAAGTAGTGGTACCGCGTCATGTCCTGAACCAGAGAAACGCGACAGTTTGAAGAAGCACCATTAGTCATACAATTTCCAAAACAACCCGCTCTCCGATGAGTAATCAGCTGTCACATTGTTCCACTGTGAGTAATCACCCACTGACTTCTCCACGTTAGTCAAGTGCCCTCAATTCTACAGCTGGACCATGTTATGCGCCACAATACGCTTCCCTCAGTAGTGCGCAAAGTTCACTTTACTGTCCTTGTGTTGTTGTGCCATTGGTGTTTGTCTTTTCAGAATGTGACAATTGTTCTTGGCATAGGTACAAGTGACAATGAGTCTAGCGCTCTACCGCAGTTGGCGGAATTATTCTGAAGAATTCCCCTGGCCTCCACAAACTCCAGTTTGGCTTTTTTGCATGGTAGGAAGTCAGGATCTGTGGCTGTTTTGCTCCGTCGCTTCCTAGAGTGACGGTCCAGTCTGGTTGGGTTGCAGTTTTCCTTGTCCACTTTGAGTCCTGCGGGGTTGTGTAGATGTGAATGACCCTCGAGTCCGGACCTTTGCCCATCCTCGGTGGACTGTGTCGCTATCGCGCGCAGAGGTGTTGTCGTGGAGCTCGTTGTGTCCATGCGCTCTTCTGTTTGTGAGGTGATCTCTGTGACACTGTGTGTGTCGGATTGTCCGTTTTTCTCGCTTGTCAGTCGGGCAGAGTGGTAAATGTCCCTTGCAGACTTCATGACGAGCGTCAGCAACAGGCTCCGGTGGAGTCGGAGTCCACCACGCTGGGTGCGCGAGCTGTACAATTTACTCAAAGCCTGGACCATAATCTGCTTGGCCTCTGCTGTGACATCCATTGTTCTCAGTTATTTAATTAACTTCGAATGTCCTTTTAAATATACAAACAATATTTAGGCAATGTTCCCTGAGCTCAGTTTACTTTTACTGTCGTTTCATTCAGCGAAGTAAA
>TU313193
TTAGATGTCAGAGAGTCTTTTATTGTACAAAATTGAGGTAGATAGATCATAACATCATAATGTCTGTTTGTAGTAGCTTATGTCATGTTGACCTGCTGGAAAATCCCTGGTCGGTCAGCTACAATGTCCCAGCTGGTTGCTGATCTACTAGCTTGTACCAGTAGGAAACCAGCTACAGTGTTCCAAAACACAGCTTAATATGGGTTTTTCCAGCAATGAGACCACATAAAATTCCAGTGTGATAACTGGACAATGACAGCACCATGGACAAATACAACGCATAGTACAACCAGAAAACATTCTTGGCCATTAAATAAATAGATTAAGTTCATGTGAATGTCCGTTGAAGTTCTCTCAGTAATACTTCTCGTAGAAGTAGTGGTACCGCGTCATGTCCTGAACCAGAGAAACGCGACAGTTTGAAGAAGCACCATTAGTCATACAATTTCCAAAACAACCCGCTCTCCGATGAGTAATCAGCTGTCACATTGTTCCACTGTGAGTAATCACCCACTGACTTCTCCACGTTAGTCAAGTGCCCTCAATTCTACAGCTGGACCATGTTATGCGCCACAATACGCTTCCCTCAGTAGTGCGCAAAGTTCACTTTACTGTCCTTGTGTTGTTGTGCCATTGGTGTTTGTCTTTTCAGAATGTGACAATTGTTCTTGGCATAGGTACAAGTGACAATGAGTCTAGCGCTCTACCGCAGTTGGCGGAATTATTCTGAAGAATTCCCCTGGCCTCCACAAACTCCAGTTTGGCTTTTTTGCATGGTAGGAAGTCAGGATCTGTGGCTGTTTTGCTCCGTCGCTTCCTAGAGTGACGGTCCAGTCTGGTTGGGTTGCAGTTTTCCTTGTCCACTTTGAGTCCTGCGGGGTTGTGTAGATGTGAATGACCCTCGAGTCCGGACCTTTGCCCATCCTCGGTGGACTGTGTCGCTATCGCGCGCAGAGGTGTTGTCGTGGAGCTCGTTGTGTCCATGCGCTCTTCTGTTTGTGAGGTGATCTCTGTGACACTGTGTGTGTCGGATTGTCCGTTTTTCTCGCTTGTCAGTCGGGCAGAGTGGTAAATGTCCCTTGCAGACTTCATGACGAGCGTCAGCAACAGGCTCCGGTGGAGTCGGAGTCCACCACGCTGGGTGCGCGAGCTGTACAATTTACTCAAAGCCTGGACCATAATCTGCTTGGCCTCTGCTGTGACATCCATTGTTCTCAGTTATTTAATTAACTTCGAATGTCCTTTTAAATATACAAACAATATTTAGGCAATGTTCCCTGAGCTCAGTTTACTTTTACTGTCGTTTCATTCAGCGAAGTAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU313192 False 1422 lncRNA 0.45 1 4791382 4792803
TU313193 True 1322 lncRNA 0.46 1 4791382 4792703

Neighbor

gene id symbol gene type direction distance location
CI01000069_04692723_04695795 ELFN2 coding downstream 94815 4692492 ~ 4696567 (-)
CI01000069_04628032_04638137 SGSM3 coding downstream 153245 4627853 ~ 4638137 (-)
CI01000069_04603992_04607459 NA coding downstream 183796 4603099 ~ 4607586 (-)
CI01000069_04599199_04600481 RL23, RPL23, RPL23.L coding downstream 190901 4599169 ~ 4600481 (-)
CI01000069_04595809_04598174 NA coding downstream 193208 4595750 ~ 4598174 (-)
CI01000069_04802439_04905601 CACNA1A coding upstream 8794 4801597 ~ 4905886 (-)
CI01000069_04919538_04930550 GTF2F1 coding upstream 126216 4919019 ~ 4930550 (-)
CI01000069_04932463_04940554 NA coding upstream 139341 4932144 ~ 4941471 (-)
CI01000069_04942590_04973602 NA coding upstream 149608 4942411 ~ 4973663 (-)
CI01000069_04983344_04983640 IGHV4-2 coding upstream 190519 4983322 ~ 4983640 (-)
G276114 NA non-coding downstream 80420 4704052 ~ 4710962 (-)
G276094 NA non-coding downstream 87913 4699271 ~ 4703469 (-)
G276133 NA non-coding downstream 121571 4669332 ~ 4669811 (-)
G276129 NA non-coding downstream 125969 4665170 ~ 4665413 (-)
G276064 NA non-coding downstream 166480 4613854 ~ 4624902 (-)
G276107 NA non-coding upstream 211576 5004379 ~ 5009473 (-)
G276193 NA non-coding upstream 266530 5059333 ~ 5059568 (-)
G276103 NA non-coding upstream 293314 5086117 ~ 5089577 (-)
G276078 NA non-coding upstream 301315 5094118 ~ 5096986 (-)
G276095 NA non-coding upstream 345555 5138358 ~ 5152509 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 984305 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1022162 3765673 ~ 3787588 (-)
CI01000069_03415853_03417644 LIMD2 other downstream 1365008 3412973 ~ 3417644 (-)
G275699 NA other downstream 1713214 2992504 ~ 3078168 (-)

Expression


Co-expression Network