G274976


Basic Information

Item Value
gene id G274976
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4848022 ~ 4851034 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311970
CATTTTTGGGTGAACTAACCCTTTAAGTACACAGTCTTGTATCTTTTTTTTTTTTACCTTGTAGCTGGTTGGTCTGGCTTATGACAACTCTTTAACACAGACTTTTTTTAAGTTCCTATGAGAAAAATAAACGGGAAAAATACTCCTGAAACCAAGGCTGCTAAAAAGGTAGTCAAAAACTGCTGCACTTTATACTGCAATAGTCTGCCACTGAAAATGAATTCACATTTTGGCAGGGAGTGAAAAATCTGAGGAAAATGCTTGTAGTATGAAGTATTCATACTTCACAGACAAAATCGAGAAAACAAAGTAGAATATATGCTTCTGGCTCCAAAAAAATCTCAAACAGAAGATTTGATGGCAGTAACCTACTAAACCTTTGCAAATCTACTCATTAGTTCTTCCTTAAAAGTGCATAACTTACATTTTAAACACTTGACTCCTAAAAGTTGCATAAATCAAGCCAACCAGATTTGAACTGTTGATTTCAGCCTGAAGTTGCCATTTTTGTGCATCAGAGAGCCAGTGAACGAACTGTGGGTGGTCTATGGTCATGCCGTCTGAGGCTGAGACTAGGTAACATACACACATTTTCACACAAATCTAAATCTATTTTTGAATGTAAGAGTTATAAACATGCAGTGCCATTCTGCATGTGACTTCATCGCAGTTAGTTGCCATGCCTCCTTGTTCATCATGATCTCATGATCCAGTGCTTCAAAGCTCATACTGTCACATACAATAGTATGTCACATGGCACAATCATATGACCATAAGCGCTTCACCTGCAGGGCAATGGAGACCCAAGGCTCTGCTGGAGTCTGTGATTCAAAGAAATTTACTCTACATGCACAAACTGTGGCAAAACTGTTTAAAAATAATAAAGGAGGAATTTACTTAGAATGATTTTTCACAGCAAACAACAGAAAAGAAAATATATATATAAAAAAAAAAACAGACTCCCAGCAGGCTCAAGTCTGTCAGTTTAAGCAGTTCACAAGGCTAATAAAGTTTAGTCAAAAAAGGCTCAAAACTGGAAACGTGTGCAACTGCGGCATAAACGAACACTGACCTTCTCAACAAACATCTCTCTATGGCACGAGAAACGTTGTCTCAGTCATCTCTTTTCATTCTCAAGAGATGACCTGGATCAATCCCATCACTAAAGAGGACTTAGTTAGGACTGTCTGTGCCACTAACTTACTCAAACATGCTATTTGAACATGCAGTGCATCTGTCCTATTCCAATGTGACTTTTTGCCAATCAACCCCAAAAGTAACGAGAAATTTATTTATGCAGAGACCTTTATATACTAAAAATGGTCCACCAAGAAAAACGTCATAACCAGTATAATAAGATAGTTACAAATCTCACTTCTGATTGGATGAGCTGCATTCAAAGCCATTTTAATATGCAAACACACACTGGTGATCACACATTCTATACATTAATCGCATCAAGTTGCCATGTTGCTGGGCAAACACGAACAGCCTAATGCAAACATAAATGAACTTGGCATAAGAATTATCTTGATAATTCTTTTTAATAATAAAATATATATACACACAATAATTTGAGTAACAAAAATGCAAACACAAAATATATATAATGTAACTATTTAAAAATTGGTGCCTTTTATTTCTGTTACTTACATAAGCAAACAGTCAATTGTTTCACTGGGCTTCACTCATGTTTTCAGTTCTACCTGTAGTTATGCAGTCTCTCGCTCAGCTGACTTTTTGCTGCAATAAATAGACTGCCTAATTGGATATTGCATTCATCAAAATGGTGATACACATCTCAATTGGACATTGCCCTTCTAGGAGGTGAGCAGTTTGATTGTCTGTAATCCCATTATGGTGTTATCTTTCTGGGCAAAGACCCTGTTCAGCCCTAAGAGGTCCTAATGCATTCTGTGTTGTCTTGTTTCACTGCTTTACACAGGCAGCCCTGCAAAAGATATCTGTATATAGAGCATCACCTGACATTTTTACTGTATGTCTCCTTATGCCGCTAAAGTGCATCGGTCTAATCTGCTGATTTTTATCATGTCCAGATCTAGTTGTGTTAGTCTGTAATGTTAAGTGAGTCATTCCATTAAAGGACCACCTGTGTCCAGTCATCTGATGGAGTCTACTAACTACAAAAATCTTTAAATATAAAAAGTATAAATATATTAAAAAAATTAAATTACCTGTAAAAGTAATGTTTTTATAGAATGCTTATATTTAAGTCACCTTTCTGAAATCAAAAAGGCACTTATTTCAAAGAATGAGTCCAGTATTCATGACTATTTTACTTGCTGTAAATCAGTCACACCACACTTGTTAGACATTTTAGACAACATATTCGAAGGCCCGACACAGAAACAAAGAGACACACACGTACACCATAGACACAAACACGTATGTTAACACATTTAGGTGTCCACATACTGAAGATTGTACCAAGAGTTGATTAGCTGTAAGATTGAGTTACTGCAGCTGGCTAAAGAATGACATGACCTTGCCCTTGGCATGTGTCCTATGTGTGAGGGACGTGGTGAGAGGACGTTTGAACGGACAATCAGACAGACAGATCAGTCTATAGAAGAAGAGGACAGACGTGTGATGAGAAGGACAGGCAATTAGAGCAAACAGAGGGGAAAGGGAGAAAGAAAGAGACATTACCCCTCTCCTTCCCCACCGCCTCCTGCACTGTAGGTGTTGAGAGATGATCAGAGACAGAAAGACAGAGACAGACAGAGCCAGAGACACATACAAAGACACAAAACACACACAGAGACAGAAAAAGGCACAGGAAAAGAATGGGGGTTTTGAAGCAGGAAAAACATCAATATGAGACAGAGAATCACAAAATAATAGCAGACCTCCTAGTTTGGTTTATATGTGGACACCTAATCTAGTGTAAACACTTAAAACAACTGAAAAACAAATACAAAAATACATATATACAGGGTCCAAAATTAACTTATACCAGCCTGGGTGGGTAAAGAAGAAGATCTTAATACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311970 True 3013 lncRNA 0.37 1 4848022 4851034

Neighbor

gene id symbol gene type direction distance location
CI01000069_04791495_04792375 NA coding upstream 55342 4791351 ~ 4792680 (+)
CI01000069_04776672_04785162 NA coding upstream 62590 4775370 ~ 4785432 (+)
CI01000069_04773976_04774606 NA coding upstream 73063 4773976 ~ 4774959 (+)
CI01000069_04612170_04623197 GTPBP1, GTPBP1L, GTPB1 coding upstream 224571 4612170 ~ 4623451 (+)
CI01000069_04562461_04568806 MPP2A coding upstream 279126 4562461 ~ 4568896 (+)
CI01000069_04917103_04918567 ALKBH7 coding downstream 66069 4917103 ~ 4918901 (+)
CI01000069_04981836_04982608 NA coding downstream 129925 4980959 ~ 4983096 (+)
CI01000069_04990240_04994522 ALDH3B1 coding downstream 137701 4988735 ~ 4994869 (+)
CI01000069_05002707_05021316 CARM1.L, CARM1P1.L, CARM1 coding downstream 151673 5002707 ~ 5023082 (+)
CI01000069_05033299_05034403 NA coding downstream 182265 5033299 ~ 5034605 (+)
G274964 NA non-coding upstream 8374 4835570 ~ 4839648 (+)
G274948 NA non-coding upstream 17005 4828748 ~ 4831017 (+)
G274938 NA non-coding upstream 80275 4767532 ~ 4767747 (+)
G274937 NA non-coding upstream 80882 4766922 ~ 4767140 (+)
G274897 NA non-coding upstream 151950 4685176 ~ 4696072 (+)
G274977 NA non-coding downstream 3299 4854333 ~ 4854569 (+)
G274967 NA non-coding downstream 4372 4855406 ~ 4855607 (+)
G274965 NA non-coding downstream 6286 4857320 ~ 4857761 (+)
G274963 NA non-coding downstream 7269 4858303 ~ 4858782 (+)
G274969 NA non-coding downstream 8336 4859370 ~ 4859591 (+)
CI01000069_04556116_04558002 PYY, PYYA other upstream 289542 4555269 ~ 4558480 (+)
G274619 NA other upstream 714644 4129128 ~ 4133378 (+)
G274603 NA other upstream 1044521 3800023 ~ 3803501 (+)
CI01000069_02894136_02894807 COX6A2 other upstream 1953134 2893418 ~ 2894947 (+)
G274953 NA other downstream 73433 4924467 ~ 4926687 (+)
CI01000069_05046565_05048523 NA other downstream 195193 5045967 ~ 5049408 (+)

Expression


Co-expression Network