Item | Value |
---|---|
gene id | G274950 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000069 |
NCBI id | null |
chromosome length | 5329268 |
location | 4942355 ~ 4973465 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
description |
---|
PREDICTED: Krueppel-like factor 7 |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU311936 | False | 1331 | lncRNA | 0.41 | 3 | 4942355 | 4943984 |
TU311937 | False | 1335 | lncRNA | 0.41 | 4 | 4942355 | 4965635 |
TU311938 | False | 1336 | lncRNA | 0.41 | 4 | 4942355 | 4965635 |
TU311939 | False | 1511 | lncRNA | 0.40 | 2 | 4942355 | 4943984 |
TU311940 | False | 1336 | lncRNA | 0.41 | 4 | 4942355 | 4965635 |
TU311941 | False | 1515 | lncRNA | 0.40 | 3 | 4942355 | 4965635 |
TU311942 | False | 1292 | lncRNA | 0.41 | 4 | 4942355 | 4973465 |
TU311943 | False | 1335 | lncRNA | 0.41 | 4 | 4942355 | 4965635 |
TU311944 | True | 1336 | lncRNA | 0.41 | 4 | 4942355 | 4965635 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000069_04917103_04918567 | ALKBH7 | coding | upstream | 23454 | 4917103 ~ 4918901 (+) |
CI01000069_04791495_04792375 | NA | coding | upstream | 149675 | 4791351 ~ 4792680 (+) |
CI01000069_04776672_04785162 | NA | coding | upstream | 156923 | 4775370 ~ 4785432 (+) |
CI01000069_04773976_04774606 | NA | coding | upstream | 167396 | 4773976 ~ 4774959 (+) |
CI01000069_04612170_04623197 | GTPBP1, GTPBP1L, GTPB1 | coding | upstream | 318904 | 4612170 ~ 4623451 (+) |
CI01000069_04981836_04982608 | NA | coding | downstream | 7494 | 4980959 ~ 4983096 (+) |
CI01000069_04990240_04994522 | ALDH3B1 | coding | downstream | 15270 | 4988735 ~ 4994869 (+) |
CI01000069_05002707_05021316 | CARM1.L, CARM1P1.L, CARM1 | coding | downstream | 29242 | 5002707 ~ 5023082 (+) |
CI01000069_05033299_05034403 | NA | coding | downstream | 59834 | 5033299 ~ 5034605 (+) |
CI01000069_05046565_05048523 | NA | coding | downstream | 72502 | 5045967 ~ 5049408 (+) |
G274997 | NA | non-coding | upstream | 26270 | 4915853 ~ 4916085 (+) |
G274993 | NA | non-coding | upstream | 34486 | 4907477 ~ 4907869 (+) |
G274991 | NA | non-coding | upstream | 45344 | 4896210 ~ 4897011 (+) |
G274979 | NA | non-coding | upstream | 81017 | 4861107 ~ 4861338 (+) |
G274978 | NA | non-coding | upstream | 81915 | 4860231 ~ 4860440 (+) |
G275017 | NA | non-coding | downstream | 14300 | 4987765 ~ 4987990 (+) |
G275047 | NA | non-coding | downstream | 65584 | 5039049 ~ 5039467 (+) |
G275048 | NA | non-coding | downstream | 66157 | 5039622 ~ 5039915 (+) |
CI01000069_05086587_05092363 | NA | non-coding | downstream | 112569 | 5086034 ~ 5092572 (+) |
G274953 | NA | other | upstream | 15668 | 4924467 ~ 4926687 (+) |
CI01000069_04556116_04558002 | PYY, PYYA | other | upstream | 383875 | 4555269 ~ 4558480 (+) |
G274619 | NA | other | upstream | 808977 | 4129128 ~ 4133378 (+) |
G274603 | NA | other | upstream | 1138854 | 3800023 ~ 3803501 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
eurasian perch (Perca fluviatilis) | trnai-aau_6 | NA | coding | NC_053118.1 | CM020915.1 | 18213 ~ 18287 (-) |
tiger barb (Puntius tetrazona) | LOC122331939 | NA | coding | NC_056701.1 | CM032070.1 | 12987350 ~ 12992329 (-) |