G274958


Basic Information

Item Value
gene id G274958
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4963637 ~ 4964941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU311952
TTGCAAACACAGAGATTTATTAAATGTCAATCCAAAATGAGTTATTCTGGATTTGAAACATAGAACATGAAACTGTTATATCGAACGACATGAAACGACTAACAGCAGTACAGTAAGCACAGGACAAAACATAAATGTGCAATTTTAACAAAAGCATCACACTCACACAGGTCAGAATAATTTTTTTGCTCTTGAATACTATTGATTTTTCACATTATGGTATTACGGTGACTATGTTTTTGTTCATATTTGTTTTCATGCAATAACAAATTAAGCATAGTTTTGAGTGAAATTTGGCTTTGAAGTTTGACCCATGCAGTAAAGTGATGGAGGCAGAACAATGCACAAAAAACATAGATACATAATCTGACAAGTGAGCAACAGGGAGCATAAGCATTGGAAAATGCACAAATGAATAGATAAAAGTTAGCATGCATAATCTTTGTTACAAACTGGACATTCTGGACATTGTTTACTTTGGCTTGTTGAAACTTGTAATGGAGCGCTTAAATTCCCCTTCTTGGCATGTTTAACTGCGCAGGTGATGGTGGTTCCGGGGTCCTCATACTCTTGTTTTGACACTGTTAGGATGCTGACAACCGATGTGGAGCTCTTTTGATGAATAGGAAGACTGGTTATGGCCTCTTCGTAAGGCTTTTCTCTCACTTTCCACATGATATAGACATCGCCAAGTTTAGGGCTTGTGACCTCACACACCAGAGAGACATGATTTGTGTCGTTGTTACTATCAGGTCTGTAAATGGTAACATTGGGTGTCTTTTCTCCTTTATTACAATGGATTTCCTGCTTGATGTGTCCGTCGTTGATGGTGCAGGTGACAGTTTCACCATCAAACCATTTATTTGTATCAACTATGAATTTGTGGATTTTAATATTCTGTGAATTGTCCTGAGAAACGTTGAAACTTCTAGGATCCACCCGGTCATTATTCACTGTGCATGACACTGAAGCTTCTGTCACTTTTTTTGCATCTCCAGAAACAACAGCTTGCAAGACAACTTTATTATTGAGAAATAGTTCTTTTTCAATTGGTGGCTTCAGTGTCAGTGTTAATTTATCTACTAAGGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311952 True 1090 lncRNA 0.37 2 4963637 4964941

Neighbor

gene id symbol gene type direction distance location
CI01000069_04917103_04918567 ALKBH7 coding upstream 44736 4917103 ~ 4918901 (+)
CI01000069_04791495_04792375 NA coding upstream 170957 4791351 ~ 4792680 (+)
CI01000069_04776672_04785162 NA coding upstream 178205 4775370 ~ 4785432 (+)
CI01000069_04773976_04774606 NA coding upstream 188678 4773976 ~ 4774959 (+)
CI01000069_04612170_04623197 GTPBP1, GTPBP1L, GTPB1 coding upstream 340186 4612170 ~ 4623451 (+)
CI01000069_04981836_04982608 NA coding downstream 16018 4980959 ~ 4983096 (+)
CI01000069_04990240_04994522 ALDH3B1 coding downstream 23794 4988735 ~ 4994869 (+)
CI01000069_05002707_05021316 CARM1.L, CARM1P1.L, CARM1 coding downstream 37766 5002707 ~ 5023082 (+)
CI01000069_05033299_05034403 NA coding downstream 68358 5033299 ~ 5034605 (+)
CI01000069_05046565_05048523 NA coding downstream 81026 5045967 ~ 5049408 (+)
G274997 NA non-coding upstream 47552 4915853 ~ 4916085 (+)
G274993 NA non-coding upstream 55768 4907477 ~ 4907869 (+)
G274991 NA non-coding upstream 66626 4896210 ~ 4897011 (+)
G274979 NA non-coding upstream 102299 4861107 ~ 4861338 (+)
G274978 NA non-coding upstream 103197 4860231 ~ 4860440 (+)
G275008 NA non-coding downstream 4281 4969222 ~ 4986267 (+)
G275017 NA non-coding downstream 22824 4987765 ~ 4987990 (+)
G275047 NA non-coding downstream 74108 5039049 ~ 5039467 (+)
G275048 NA non-coding downstream 74681 5039622 ~ 5039915 (+)
G274953 NA other upstream 36950 4924467 ~ 4926687 (+)
CI01000069_04556116_04558002 PYY, PYYA other upstream 405157 4555269 ~ 4558480 (+)
G274619 NA other upstream 830259 4129128 ~ 4133378 (+)
G274603 NA other upstream 1160136 3800023 ~ 3803501 (+)

Expression


Co-expression Network