G276078


Basic Information

Item Value
gene id G276078
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5094118 ~ 5096986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU313200
GTACTCGAGACCACAGATTGAAAAAGAAAAAAAAAAAAGAAAAAAAAAAACGACCATCCAAAACTTGTTTAAAATCCAGAGGAATGCCTGTCAGGCTAGCTAGCTAGCTAAAAAAGTGGCCAGTCCTCCACTGTGGGCATACTGAGTCTTATCTGTAGGACTAATGTACCCCAGCTCCACAAGATCGGCTCAGATGCAACTTTGTGTAGATAAGAAGTCCGCTTCAATCGTACAAAATAACAGGGCCTGGGTGGAGATGAGCTCTAAGAAAATCAAATCCTCTTTCTTAGGGCCCTGGCTAGAATATGCACATGCTGGTTGATATACATGTACATCTGAAATCCTGTGTATGTATATAACTGGTTGTAATTTTTATTTTTATTTTTTCCATTTACTTTTCATTTTTTTCAGGCCTGAGTAACCCCGTTTCCTTCTCTCCATGAATTTACCTAGATGATAAACGCATAAACATATCAAAATTATACAAATGAAAAAACACAAATACTTGAATCAAAAGAAGCGCCAATAATGTAATGTGAAAATTTTTGTAATAATTTTGTCATTCATACACTTCCAAGCTTTTTGATAACATCAGTTCAAACTGAACGAGAAAAAAAAACGTAGTTAAAAAAAAAAAAAAAAAAAATTAAAAAACAAAGATAAGAAAAAAAAAAAGCAAAACGACATCGGTTGTATGTGAGTGTTTGCACAAGGTTGCGTGTACTGTATGACGGACGAATGCGTTTGTTTGCCTGTGTGTGAGTTCAAACCAATGTATGCTAGTGATTACAGTGGATTTGTTTTCGCCTTTGTTTCATCTTAGTGTTTTTTTTTTTTGTTTGTTTGTTTTTTTTTTTGTCTGTCTTTTGTTCGCTAGTCAAAAATATATTCGGATGTGTATTGTTATTGTATTTGTTATTAGCTTTGTTATTAGAGTTGCACTGAGTGTCTGCTTCCCCTCATTCAGCTAATCGTACAACATGATATTAAAGTACTAAGGGGACAAGGTGACAATTCATGTGTTAATGTTTACTCAAGGACTTATTGAGAAATATAACAAGTGTGTTTTTTATCTGTAATACGATTATCTACCTTATAGTGGCTTTTATTGTGGAATAATCCATGATAAAGAAATGGATTATTTTGAGTATTGCACCATTTTTTTGTTTTCAGATTATAAACAGAAAAAATGCAAAATACTACAAAAAAAAAGTATATGAATATGAAATGTGGGGAAAAATCTTTTTGAAGAACTGTGGCCATAGATTGATTTAGAGGGACTTGTAACTCCCCATGTTACACCATGATGAGCTGGATAGACATCTGGAGAAGAGTTTCTTACAAGACTCATTTCAGAGGTGCCTACCTTTCTGGTTTGCTATTTTTTTTTTTTTTTTTTATTGTTAATGTTAATTTCTGTTCTAGTTTTTGTTCACTATCTTTGTGCAAGGCCACCAACAGTTTACAAACATTTCATGTTTTTCTGAAGTTAAAGGAAAAAATGTTGCGATGGGATTGTCATGAGAAGAGAAAAGAAAGAAAATCCTAAAGGACATATACTTCCATCAAATGAATAACAAAAACACTTTACAGAATGAAGATTATTGTGCTACTTGGAGAACTCTGGGATTGATCAGTGTTGTCATGTTTTTGTTTTTATTTATGTTGGCAATGTTACTTACATAGATTATCAAAGCCTGTATTTTTTTTTTTTTTTTTTTTTTTTGGAAAGCAAAAAAAATCCTTTTTTTTTTTTTAAAAAGAGAGAAAAGAAGACATAGTTGTTCACTATCTTGCACACACAAAAAAGTGGATCATGTCTCAGGAAGGCAAGGGTTCCAGAGTACCAACTCCACGCCATTTAATGTTTGTTTTTAGAGAAAGAGGATAACGGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAACATAAGCACTGAAGGTTATGGATTTCAGAAGAAGAAAATACCTTTGTTTCTAAATCCGTAGCAGTTACATATTTACCAAATAATGAACTCTTAATGAACTTTAAAAGGAGTGCTTTATATATAAATCTATATATTGAAATTGCTTTACATTTTAAACAAAATGATCAATGATTTTGATTGTTCAAAAGACGGTGAAAGAACATACAAATGCTGTATGTTTGAATCTTTATTGTATTTTCTTAACATGAGGTCCCTTCCTGTTGAAATCAGGACCATTGTGCATTACTATTTCTTTCCTCTTTGTCATTCTGTCTCTTGTGGCGGGTATTACATGATGAGAACTAAAAACGAGGGGTTGGGGGCAGGGTTTCTGTATCAATTTGATTGATTTAAAGAGAAAAAAAAAAGCTGGTTTTTACGGATCATGATCTATGCACAAGGGGGGTGGGGTTCTTAAAGCCTCTGTGACCCATCTCTCATTGGGATTAGAGGGATTCTTTTTTGTGTGTCCTTTTATTGTGCTCATATGCTCTGTTGTCTCCCTCCCCCACCGACCCCATCTTACTTCCCATTTTTCATGTTTCTTACATACAGTACATCGCCATGCTGTGTATTCCTAAACCAATGAACGTCTCATTCTGAAGCACTGTGGGGGTTTTTTTTGTAGCCCATGACTTTCAAGGTTGTCTGTGTTCTTTGTGTGAGTGAGTGTTACTGGGATGAGTGTGGATGGAGATACTGGGTTGCTTTTGCCTTTTGATTTTAAATGTTAAGGAATATGTCTGTACTGAGATTTTAAGAAGTCAGTGGCTTTTAATGTTTTTGTTTGTTTTCTCTCTTTTTCTCTTTCCTCATAGAATGTGATTGTTGACATGCACCGAAAAAAATGTTTTGAACTATGGAGCTTCTTTCAAACAATTAATAAATTGCATTTTTGTTCTTGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU313200 True 2869 lncRNA 0.34 1 5094118 5096986

Neighbor

gene id symbol gene type direction distance location
CI01000069_05042346_05044105 NA coding downstream 48883 5042275 ~ 5045235 (-)
CI01000069_05025745_05032197 YIPF2 coding downstream 61921 5025297 ~ 5032197 (-)
CI01000069_04996783_05001227 CLPP, CLPP.L coding downstream 92891 4996340 ~ 5001227 (-)
CI01000069_04985959_04986408 NA coding downstream 107710 4985693 ~ 4986424 (-)
CI01000069_04983344_04983640 IGHV4-2 coding downstream 110478 4983322 ~ 4983640 (-)
CI01000069_05100248_05121420 TNRC6C1, TNRC6C coding upstream 3081 5100067 ~ 5121420 (-)
CI01000069_05227862_05278522 SEPT9A coding upstream 130876 5227862 ~ 5278522 (-)
CI01000069_05321785_05324036 NA coding upstream 224285 5321271 ~ 5324097 (-)
G276103 NA non-coding downstream 4541 5086117 ~ 5089577 (-)
G276193 NA non-coding downstream 34550 5059333 ~ 5059568 (-)
G276107 NA non-coding downstream 84645 5004379 ~ 5009473 (-)
G276071 NA non-coding downstream 301315 4791382 ~ 4792803 (-)
G276114 NA non-coding downstream 383156 4704052 ~ 4710962 (-)
G276095 NA non-coding upstream 41372 5138358 ~ 5152509 (-)
G276200 NA non-coding upstream 58050 5155036 ~ 5155302 (-)
G276203 NA non-coding upstream 61722 5158708 ~ 5158935 (-)
G276204 NA non-coding upstream 62417 5159403 ~ 5159718 (-)
G276207 NA non-coding upstream 70046 5167032 ~ 5167723 (-)
CI01000069_04932463_04940554 NA other downstream 151919 4932144 ~ 4941471 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 1287041 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1324898 3765673 ~ 3787588 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G43691 NA non-coding CM030125.1 CM030125.1 28488842 ~ 28491096 (-)