G276224


Basic Information

Item Value
gene id G276224
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5193636 ~ 5195528 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU313357
GTGTATGTTATGTTATGGAAGAAGGGAATATCTATCCGTCTGTAACTTACTGTAGCTATATATTGAAGTAGTGGTCCAAAGCTTCAGTGCTTTGTTGTCAGGTATGAGTCAACTATATAAGCTTATGCAGTTTGTCACAGTAAGCAGAGACTTGCCCCTGTGAATGATGTGGGTTGCCAAGGAAACAGCCTCATTTTTAGGTAAATTACTCTACTTGGCACTCGACAAAAGTGCAATTAGCTCACCAGTGGCCTGAGCTGAAGCACAATTAAAACCCAGAGGAGATTTAAAGGAGCAAAGAGGATCATGGGTATCTGACAGCTTGCTTGTTCCTAATCTCCTTGTTGCAGGGGGGTCCCTCTTTGTGTAGTTCTTTCTGAACACACGCGGTGAGGAGGAGATGGCTTTAATTATGCAGTTTGATTCAGAATATTCTGCAAAGAACCATATGGGACTTACCTTGTTAAATAATGACTTTTGAAAGCAAAAATCACTTGCATTCCTTAGTCTGCATTTTCACAATTATCTTGTCATTCTCTCTTCCTTTCTATTTTTATGTGCCCCTTTCCACGTCCTATCATTACATTGGGTTTTGTAGCATTAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAATCAAGATTTTAACAGCAAAATTGGCTACTGGATTTGTAGGTCATAGACATAAGCTTAGTGGTTCAGTAGTGAATAGTGATGTGCCCATTATTGCATAATCAAAGAGAATTTGAGTGTTTCTAAACACGTGTTAAGGAGAGAAAGTACAGCAAACACAAGTGTGATTCAGAGTGATGCTAGAGACAGTATTTAATCATGCTGGTGTCAAAAGCAGTAAACAGACGGAGGGATTCATCCTGCATGGAAATGCCATCTCAGCAAGACTGCGCTGTTGTAATTTTTTTCTCTTTTTTTCACCGTTGTTTTTTTTTTATGTGTTTCTCTCTGTGAAGGAGGTGGAGTGGTGAAGGCGAAGAGAAAACAAGACAAAGCCAGGAAAAGAGACCTGTAAGAAATCTCTGGAGTCCTGATTATAAAGAGCTCACAGACAATCCTGTTACTACTGAAGATGCATCTGCCAACTCACACATGCTACAAAACCACCTCACAAGAGTTCTTCCCATAATACACCTCGTAACTAGTTTTTTGAGTCACTGTCTAATGTTTTTTTAACCTTACTGTGAAGGCATCAGTTGATGCTCCATGTTTTGAACCATTCATAAGGGTCTCTGAGACCCCAAACGTTAGTAATGTACAGCGTCATTTTCATGGGGGACATTCG
>TU313360
GTTCACTTCGATTGGAATTTGCCCTAATTTATTCGTGAGTCATGCAACCGATTCGTTCAAAACATTGATTCAATCAGGAGGGAAACACCACTGCTGTGATTTGATGGAAAGGCGCGCGACGGTTAATTCTGCTTTGACTTGGAACTGTTTTCACTGGCAGAGCAAAAATACACCAAAAAAAACTGGAAACATTGTGTCTAAAAGGTAAGTTACTCTACAAATTCGTTGTTTATTAAAAATATAACACTCACAATTGTGTTGTTCTGTGATTATCTGCGGCCTCGTGCCTACTGATATTCACAACCCCAATCTTGCTCAGTTGTTTGTGGAAAATGTTTATTAAAATGAATAAACTGATAAATTATTGTTTAAGTGGCACTATCCTCCATACATAACCTGTGCATTCTTGCTATTTATTTGGCTGACTGTTGTGCTTGGTTGAAACGCAGTGGTCTGTCCCGTAGACCTCGTTGACGGATTGCTTCTAACAGCTAACTTGAGGCTGGTAAGCAGGGATAACTCTCTAACCCCACTAATCGGCTCCCAAGAGGCCATAACCTCACATGCAAACTTGCACGTAGCATTGTGTTGTGTGTATGTTATGTTATGGAAGAAGGGAATATCTATCCGTCTGTAACTTACTGTAGCTATATATTGAAGTAGTGGTCCAAAGCTTCAGTGCTTTGTTGTCAGGTATGAGTCAACTATATAAGCTTATGCAGTTTGTCACAGTAAGCAGAGACTTGCCCCTGTGAATGATGTGGGTTGCCAAGGAAACAGCCTCATTTTTAGGTAAATTACTCTACTTGGCACTCGACAAAAGTGCAATTAGCTCACCAGTGGCCTGAGCTGAAGCACAATTAAAACCCAGAGGAGATTTAAAGGAGCAAAGAGGATCATGGGTATCTGACAGCTTGCTTGTTCCTAATCTCCTTGTTGCAGGGGGGTCCCTCTTTGTGTAGTTCTTTCTGAACACACGCGGTGAGGAGGAGATGGCTTTAATTATGCAGTTTGATTCAGAATATTCTGCAAAGAACCATATGGGACTTACCTTGTTAAATAATGACTTTTGAAAGCAAAAATCACTTGCATTCCTTAGTCTGCATTTTCACAATTATCTTGTCATTCTCTCTTCCTTTCTATTTTTATGTGCCCCTTTCCACGTCCTATCATTACATTGGGTTTTGTAGCATTAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAATCAAGATTTTAACAGCAAAATTGGCTACTGGATTTGTAGGTCATAGACATAAGCTTAGTGGTTCAGTAGTGAATAGTGATGTGCCCATTATTGCATAATCAAAGAGAATTTGAGTGTTTCTAAACACGTGTTAAGGAGAGAAAGTACAGCAAACACAAGTGTGATTCAGAGTGATGCTAGAGACAGTATTTAATCATGCTGGTGTCAAAAGCAGTAAACAGACGGAGGGATTCATCCTGCATGGAAATGCCATCTCAGCAAGACTGCGCTGTTGTAATTTTTTTCTCTTTTTTTCACCGTTGTTTTTTTTTTATGTGTTTCTCTCTGTGAAGGAGGTGGAGTGGTGAAGGCGAAGAGAAAACAAGACAAAGCCAGGAAAAGAGACCTGTAAGAAATCTCTGGAGTCCTGATTATAAAGAGCTCACAGACAATCCTGTTACTACTGAAGATGCATCTGCCAACTCACACATGCTACAAAACCACCTCACAAGAGTTCTTCCCATAATACACCTCGTAACTAGTTTTTTGAGTCACTGTCTAATGTTTTTTTAACCTTACTGTGAAGGCATCAGTTGATGCTCCATGTTTTGAACCATTCATAAGGGTCTCTGAGACCCCAAACGTTAGTAATGTACAGCGTCATTTTCATGGGGGACATTCG
>TU313358
GTGTATGTTATGTTATGGAAGAAGGGAATATCTATCCGTCTGTAACTTACTGTAGCTATATATTGAAGTAGTGGTCCAAAGCTTCAGTGCTTTGTTGTCAGGTATGAGTCAACTATATAAGCTTATGCAGTTTGTCACAGTAAGCAGAGACTTGCCCCTGTGAATGATGTGGGTTGCCAAGGAAACAGCCTCATTTTTAGGTAAATTACTCTACTTGGCACTCGACAAAAGTGCAATTAGCTCACCAGTGGCCTGAGCTGAAGCACAATTAAAACCCAGAGGAGATTTAAAGGAGCAAAGAGGATCATGGGTATCTGACAGCTTGCTTGTTCCTAATCTCCTTGTTGCAGGGGGGTCCCTCTTTGTGTAGTTCTTTCTGAACACACGCGGTGAGGAGGAGATGGCTTTAATTATGCAGTTTGATTCAGAATATTCTGCAAAGAACCATATGGGACTTACCTTGTTAAATAATGACTTTTGAAAGCAAAAATCACTTGCATTCCTTAGTCTGCATTTTCACAATTATCTTGTCATTCTCTCTTCCTTTCTATTTTTATGTGCCCCTTTCCACGTCCTATCATTACATTGGGTTTTGTAGCATTAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAATCAAGATTTTAACAGCAAAATTGGCTACTGGATTTGTAGGTCATAGACATAAGCTTAGTGGTTCAGTAGTGAATAGTGATGTGCCCATTATTGCATAATCAAAGAGAATTTGAGTGTTTCTAAACACGTGTTAAGGAGAGAAAGTACAGCAAACACAAGTGTGATTCAGAGTGATGCTAGAGACAGTATTTAATCATGCTGGTGTCAAAAGCAGTAAACAGACGGAGGGATTCATCCTGCATGGAAATGCCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313357 False 1301 lncRNA 0.39 1 5193636 5194936
TU313360 False 1893 lncRNA 0.39 1 5193636 5195528
TU313358 True 894 lncRNA 0.38 1 5194043 5194936

Neighbor

gene id symbol gene type direction distance location
CI01000069_05100248_05121420 TNRC6C1, TNRC6C coding downstream 72216 5100067 ~ 5121420 (-)
CI01000069_05042346_05044105 NA coding downstream 148401 5042275 ~ 5045235 (-)
CI01000069_05025745_05032197 YIPF2 coding downstream 161439 5025297 ~ 5032197 (-)
CI01000069_04996783_05001227 CLPP, CLPP.L coding downstream 192409 4996340 ~ 5001227 (-)
CI01000069_04985959_04986408 NA coding downstream 207228 4985693 ~ 4986424 (-)
CI01000069_05227862_05278522 SEPT9A coding upstream 32334 5227862 ~ 5278522 (-)
CI01000069_05321785_05324036 NA coding upstream 125743 5321271 ~ 5324097 (-)
G276110 NA non-coding downstream 2109 5190068 ~ 5191527 (-)
G276222 NA non-coding downstream 6046 5187373 ~ 5187590 (-)
G276220 NA non-coding downstream 8042 5185326 ~ 5185594 (-)
G276214 NA non-coding downstream 16290 5176967 ~ 5177346 (-)
G276213 NA non-coding downstream 16702 5176281 ~ 5176934 (-)
G276100 NA non-coding upstream 119146 5314674 ~ 5315903 (-)
CI01000069_04932463_04940554 NA other downstream 251437 4932144 ~ 4941471 (-)
CI01000069_03804630_03807180 PRMT1.S, PRMT1 other downstream 1386559 3804616 ~ 3807180 (-)
CI01000069_03768812_03787588 BRSK1 other downstream 1424416 3765673 ~ 3787588 (-)

Expression


Co-expression Network