XLOC_010540 (BX322530.1)


Basic Information

Item Value
gene id XLOC_010540
gene name BX322530.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14093781 ~ 14167673 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020668
AGTAACCGAACATATATACAGCATGGTCATTCCTCTCCTCCGTCTCCCCTCATCGGTGAACTTGGGTTGTGGCTATCTGGGTACACAATGTACGACCATGCTTTTGATGTAAAACAACTGCGCAAGAGACGGATAGAAACAGGGGGGCGAAGAGAAGAAGGGGGGACGTGTGTATCGTGTGGTGTTGCACAATATTCATCTTCATGGGTCCTTCGCTTCGCGCAATGGACACGCAACATCCCTCCATTTATCGTTTCAGCTCGTTGCGCACACTTGTAAATTAGCTGCTCTTTTTCTTGCGATACGACCTCTTCGCAGCTTCGGcCCCTTCCACAGTAACTATTTCAAGTTAAATGAGATGACAGAAGAGTATTAATAAGACTGAAAAACACAACATTTCCTTTTCTCATAAACTGAAAACTACTGACAATACTTTGATAATAGTCAAAGTAATTCTCTCATTCACAACTACTACTCTGAAAGTTCAGATggataagaaaaagaaaaagacaacacCTGCCCCAAGACTAGAGAAAGAAGACTTGACAGATGACAGGAAAAGAACAAGACAATCCAAAAGGGCTGAACCAGAAGCATCCTCAAAGACTAATAACAGTGAGTTTATGCAGCAGCTGAATAGGTCAGAGGAGTTAACAGATACAAAGTGCGATCAGTCCGATGGAAATGTAAGATTGAAAATAGGAGTTGGAGCCAAACGGACAAAAAAGCCCCCAAAAAGTCTTGAGAACTTCATATGCAGGCCCACAATCAGGATCTCTCAGAGGCTTTCCCATGGAGATGGCCATAGTTCAAGTGTGGGTGAAGTCTCAGATTCTGACTCCAGATTGGCCAAGAAGTCACATCGAGATGTTCAGAAAAAAGATTGCCTTTCTACAAAAGGTTCCAAAAAAGTCCTTCCCACTTCCAAAAAAGGGGACTCTACACCAGCCATTGCTGCATCTAAAAAGGCTCCATCAAAAAACACAAGGAAGACCGAGTCAAAGTCATTATTAACATCAGATGGCCCTTCATTAGCAGTTCAACCACAGACAGATAGCAAAGTACCACTTTCAGATAAAATAACCTCCTCCACCTTTTTGAAGCAGACGCATTCCCCTCCAGCTGCACCTTCGCCGCCTTCCTCATTACAACAAAACTCCAGTCTACAAGACAGCACACAAGTTTTAAATGCTCAAAAAGAAAAGAGTGATGATCTCCCGACTGAGGAAGCAATGACCTCCTCCCCTAGTTCAGATAGCTCAAAGAATATGACACAGAACACTCAGATATCTCAGCAGTCTTCTTCCAGCCTTGAAACTCACCATGAAAGCAAGTCATCTCCAAAAAGATGTAGTGAGAATTCTCTAAGGCAAACTCTCCGTCCTCCAAAAAAGACTTCTAGAACACGGGAGACAAATGTTGACAGGGTTTTGATTGCAAATGAGAAAGAGGATGGTGATTATGCATCTTCCAAAAACATGTCTAGCAACAATACTAACAATAGGAGTAGAGAAAATGGTTTACTGCATCAGCCTAGTCCCTCTGTCAATGCACCATTGCTTCCTCCTGCCACAGATAAATCTGCAGAATCAGCAACTTCTGAGAACAGCACTAGTGTACCAGAGTTACCGGAGAACAGAGAAAGGTGCAAGAAGCACAGTGGAAGTGAAGTCATAGATGACTCCCAAAAAGTGACTATGGAACCGGCTCAAACTGTTGCTGTGCAGTCAAAAGATGTCAGCAGAGAGGGgcatgtcattgaaaagaaaaagaaaagaactaGGCGTAGTTCAAATCAGGAAGAAAATGTGAAATGTTCCCCTCGAACTCCCAGCTGTGCAGATTCTCAGTTTAACAGTTCTGCTCAAAGTGAAGAGCCACCCTTACACCCCAAACAAGACACCATTTCACAAAGGACACAAAAATCTGTTCAGATTTCAAATATAGTAAATCAGGGGGAGAATATGGATTTGGGAGCTTCTAATGTTAATCCCACTGCCTGTAAAATTATACCTCAAAAATCAAAAGGTAAAAGAGATCTTTCCATGAAGTCCTTGAAGAAATTGCCATCAAAGCAGGGTAAACAAGACCCAGTCAGACAACCTCTTAAATCAAAAGAACTACAAAAAACATCCCCAAGATCAGAAAGCGCGTTCATTGAGGTCCCTACTAAGAGAAGGGGTCGACCAAAAATAACTAGGATGGATGAGTCTCCTCAGGGAAGTAAGTCTCAGCAGTCTTCTACTAAGTTCTCTATACTTGAGCACTCAAATGTCCCTAGGCCAGAAGATGGCTTGAAACTCCCAAATCCAACACCCAAAATACAAAGCCATCCAAAATGTTCCCTGTCTGCTCAGACTAAAAAATCTAAATCACTACACTTAGCATCAGGAAAGACAGGTGCTGAAGGAAAACTCAAACCTTCAGTGTCCAGAGCTAGAGATGCACAAATCTGCCGCAAACGAAATAGGTTAATAATGAGGTCAATTAtcaaaaatatcaacaaaatgAGAGTGAAGAGGAAAGATAAAGTACTCACGCAGTTTCTATCAGGGCAAAGCCAAACTTGCACAACTGATTTGGCTCAAAAAGACAATAAAGGGGATGCCGAATGTTCAGTGTCCGAAAGTGCACAATCTTTATCCTCACTTGTTACATCTTTTGGGGGGAAACTTGGTCCTCAAATTAACGTCAGCAAACGTGGGACAATCTACATAGGAAAAAGAAGAGGTCGTAAACCTAAAGCTCAAAGGGAAACTTTTGGCCAAGACTCGGACCAAGTTCAGAGTCCAAAGACTCCGCAAGTCTCAACAGAATCTTCAAATCAGTTAAATTGGTCCACCTCTGGTGAACAGAGTCATTCATTTGATGGCCAAACTGCTTTGCACAACTCCCCCTATTCATTTAAACAACTCAAACCCTCTTCTTCTAGTATTAGTTCTTTCCGGAGAAAACTTTATCCTGGCAACCGTAAATATGATCAACATTCTTCTCCAAAGGTAACAAATTCCCAAAAGTTTAAAGCATTGCCTGAAGAGAAATCTAAACATCCCACCTCTTCACAGCCAGCACCTTGCCCTTCAGCCACATCACAGTTAGGTTCTGTAAGGATTCAAAATCACAGAGCAACACACCTTGCACGATCAGTCCTGATGGAGCAAGAAAGGCTCAAATACAAGTGTCATAGAAAAGGACATAATTGCTTTAGCCACGATAAGATTAGGAGACATAAACACAAATGCAAGAAAAAGTATCTTCAACTCAGGGCCAAACGGCAAGACCCAGCATTTCTGGCAGAGGTTGAGGAGTTAGTGGTCAGGCTTAGTGAAATTCATATTGTGCATCATCTTTCATCTCGGGGTTGTGGGGATGAAGCAAAATCAGGAAGAAAGAGTGGGAAGGGCAAAGCTCACCCTCACGTTCTAAAGTGTCTGCCGCAAAACCTTCACCATCCAACTATGTTTCAAATCAACTTCAGTGGTTACTACTCTCCTCAGTCAGAATTTTCTCGTGACTCTCTGCATTATGTTGGCTTGGCAGATTTTAAAAGGAACAATGGCTGCCCCTCACAACCAGGTGAACATATTGTCACTCATTGTCCAGTAGTACATAAACTTGGCTTCCCACTGTCAGCAGGTGGTTGTTACCACTCGCCCTACAAAATGCCTCTTCCTACCACTTCGTTTGGTTTTGGACTCTATAGAGGATACCCTCCATCTGCAACTATTTACCCCTCATCACCATTTTTACCCTCATATGTACATCCCTACTCCAAAAATCCAATTTTAAGCCCATCAAAGTTCCATAAAAGGAAGCACAAATTTCTAAGGCGTGAATCTGAAGTTTGTCATGGGAAGCCACATGGGACTTACACTAATCTAACATCTCATTCCTCTAGTGACTGGTTCAGTAGAAATAGCTGGCAAAGAGAAGATGACAGAGAGCAAGGTAGAGATAAAAGATTTGTGGATGATAGGTTTAGAGAAAGAGAAGGACTAGGCGGTTTGCTTGGACGAAGTAACCCTAGAAAAGACCATTTCAGAAGGGGACTAGGTCTGTCAACAGATTACCAATGCTCTACCTCAGCACCCTCAAAACAAGCTGACAAACACAAAACTTCACCGCTTTCATATATCGGACCTGCGCACCTAAGACCAATTTCAAAAGTGAGGTGGGCAGAGCATCGGCAGCCATGGAGGTGGAGAGAGAGTGTTCAGGTAGAGTCGAAGAACAGAGGCTCAATCCAGGAAGGTGGAACAGGATACCAGGAGGATGAGGATGAAATTGATGAAGATCAACCATCACCCCCGCCAGTTGACAGAAGCATCCAACATCACACTTTCCTGAGGAACAGCAATCTTGCTAGCACTTCATTTAGTCAAATGACAGCCCAAAGGAGTGTTGGTGAAGTTCAGTGTGCTGCTAGAAACTTAATGACAGCTGGAAGCTTGTTGATGGAGTCTTGCTCAACTGGAGTAAAACGAACATCAGAGAGCTTCAAGCCCGGAGGTTCACTCTTCAGTGAGCACTATTCCAACGCAAGTCTTTCTTTTAATGAAGGCCAAGAAAGGGGAGCACGGGAGAAAAGACCCGGCATCAGCAAAACACACTTTCAGACCAACGATATCAGGCTTTTTTCCTCTTGTTCTGCCACCAAAAACAGCCTTTCTTGTTTCGGTATTTCTAAAGACTCAACACCAGAGAAGGAGAAACTGAAACATGTCTCGAATCCTCTCAGGAAAAAGAGTCCCAAAGGTCAAGCGGTCACAGGAGGTGAGGTGAAGAGAAGGGGAAGAGGGCGACCACGAAAAAACCCTGCACCGTGCTTttctccaccaccaccaccaccagtacTTGTAGATCAAGAAGTGACAGAGTTTCCTGCAAAACGGAAAAAAGATGAAAGAGGTGATTATGCAGAGCTCAATGCAACTGAGTACATGGCTCAACACGAGAAacgaaaaagaaagagaaaaagagatgATTCTTGGTGCAGCGAAGGGCAATTAGACGAAGACGTAGCTCTGAGTCACAAGCCTTCACAAACACACAGCGACACATTCTTCCCTTCCCAAgatccaatcagccaatcagagagcagaTCCGCCAAGGCTTCTGAAAAGAAATATGAGTGGGCGGGGCTTTACTCGGATGTGTATAAAAGCGATAACCCCAAGAGTCTGTCCTCTCCAGTACACACAGACTGCCTTGAGTATGATCCTGAAGAGCATGAGCACGGCCTGCTTCCTGCACCTTTACACGTagGAAAGTATCTGAGGCTGAAGCGGATTGACTTTCAATTGCCCTATGAGATTTATCGGCACTGTGCACATAAAaagCATTCTAAAAAGTCAAAGACCCCACAAAAGATGCCCCCATCCAATGAGCCTGTCGATGTAATGTCTCACACTCAGACTGAAGAGAGTTGCTGTAAACCTCATGACTGCATTTCTGACAGCACTAACAAAAATGACACAGACCAACAAACAACACCTACAGAAGAGCTTGGAGAAGAAGTAACTGGAACAGACATTAACAACACACCTCCCAATCAGTCCGATCCTCCCAAACAGCAGGAGAAAGGCAGTGATGCTGAAAATATCCCCTCCCCCCTCCTGATGATGCCCTTGTCTTGTGAGGAGAGGAGCTTCGTCTTGGAACACGGCGTTTTTCTGGTGAGAAACTATGAGAAAATGAGAGACAGACAGGGATTTCTCCTGAGGGAGGAGATGGTGGAGCGAGAGAACGGAAGCAGAGGAGatggagagagacagaaagaggatCTTGAAGACACCAGCTCCAAGTCAGACCAGCGCCTGTCTCAGTGGAACCTTTGGTCTGGAAGCAGAGAGCGAGGCGAGGAGAGGTGCAGTGAACAGAGCCCAAACCTCATGCAAACACTCCAGGGGATATATGACGTCATCGTCAGTCACAAGGGGTCATCTGGACAAACCCTCGCCGCTCCCCTGCTGAACCTGTGCTCCAGAaagagATCAGGCTCGGCTCCTGTTGATCTCACTATGTTGCAGAAGCAGCTGCACTCAGGCCACTATGAGAGTCTGGAAACCTTTCATTCAGACATGCTGAAGGTGTTCCACTGCGCCGAGAAATACTATGGCTGTGAGTCGTCGGTGGGTCGAAATGTGGGGCAGTTGAGGGAAGTGTATCACGCTGCTCATCAGGAGGCCTTCACTCGATTCAGACACTTCCTGTGAGTGACAGAAAAGCACACCAGCGACCTCTATCAGGACGCTGCTGTTACCAAACCCAGAGGCATGATGGGCCTTCCAGAAGGCAGATGATGCTCTCCGATACCAAAGACCTGCTGTATGTTGCACTCACAGTCGCACTGCACAGGTTAAGAGACAGCACTCCTGGAAATGCCATTTGTGAGCATGAAGCACGGCTGATGTTTGACAATGTGATTAAGTTGAAAGCACCTCGGCCTTTCTTTCTCTCAGGGAAATTCGAGCGAAGAAACTGGAGACATGAACAACAAATCAACATCTGAGACCATCATACACCCCAACAACATGCAATTCTTTCCATTTCAGATAGTATCACCATAGACTGGACATAAGCATGTTGGATGGGATGCAGGAAACCTTGCAAAGAGACGTGTGCTGCTGTTTTGGGTCTAAGCGACGAACATGTGCAGACTGTTTTCAATCATTTAACATCTCCATTAGCATACAGTACCTACAAGAAAATGAACTTCACTGAATGGACAGTTGTTTTTATACAGTGTGAACAGAATTGTGGTCTACAGCGTTCTTTTTTATGTATAGAAACCTCTTTCAGGGTAATAAGATAATTGCGACTTTTTTCATGCAGTTTGAGTTTATATCTCTGAAGgcaaattttctcagaattcAAAAACTTTGTGGAAAAAATATCAAGAAAATCATCTCAGAAATGGTGATGATGTGGGGGGGGATAAGTCAGAATTGACATGCAGTTTGTTACAAAGTCACCTTTATTTTTGTATCtaaaaattttaatgtttttatttctgaattTCTAAAAGTTTAAGATGCGACATGCAAATTTGGATTTGtaagagaaaaaaaagtcaaaatacttgcttatttttttaagaattgcAAAAACAACAGAAATTTTAGCTAAATACAAATGCGATCCTGAGAGAAAACTCCAAATTGTGAGTTGCAAACTCAAATTCGCACTAGCatcaagtgaagtttcacaaactaatttcgagaggagcacgtgatatgattgactgcagctggtctctcatttACAATCactagctagccaatcagattaatccaaactcactataataGCCCAGCTAAAAAAATACTCCCTTGTCTTCGTTTTCAGAAGAAACCCCCCTGTAaacccccccatccaccccatcttctccttttcttcctttaccatggggagctctcgagaactacctgatctcgtactccccttacatgctcagtcaaccaggcaggagccctgggctcaattatctctgagctcagggttctctcccaggacaacaTGCAAACCTTCAATCATTgatcaaacaatatctaagtgtgaactcttgaaatgaataaAGGAGgagtttgatatttttttaattgtgtccTTGAAACCAGCTTTCCTGATTAAGTGTTTTGTGCTGAGGGTCGTAACAATAATATAAGCAATAATGCATGAATGGTTTAATAACGCAGCCTTAATGTAAGCAAGGATGTTTATTTGAAAGGGAATTTATTAGCACTTTGTGCAGAGCTGTCTTGTGTTAGTTATGTTTTTACTGGAGCAGTAATCTTTATAGCTTTGAGACTCACAGAAATGTTTTATATTgatgtattttgtaaataatgtatatttgGAAAATGATGTTTTAGTATGGTTTAAAAAACTCTATTTAGTCTTAAATTGATGTGGGTAATTCATGTTTTTCAtgtctttaataatatttttatgaacaGTTTTAAGGTGACTACTGTAGATGCATGCGtgattttaaacaggacatttattGTTTGTAAAACATCAGATTTTTTGTGCATGGCATACTTTATATTGCTTTATTGTGTTTAATAGCTGTgtatactgcacacacacacaatgtatgCAACACATTATATGTCTATGCTGAACTAAGAAACTGGTTGTTGGAAGCTCATTAAACAGTTTAAAGCAGAACAGAGGAATTAAAGCAGCTACAGTTAACCtgctaaactttttttatttgcaaaaaaaaatgttgacatgTTTGTATCGGTATTTGTATGCAATACAGAATATGAATTACATtgtcaatgaaaaaaaatacaaaatacaaatattaaagaacatgaaataaacttgtaatgtaatgtgta

Function

GO:

id name namespace
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000088741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020668 True 8354 lncRNA 0.42 16 14093781 14167673

Neighbor

gene id symbol gene type direction distance location
XLOC_010539 NA coding downstream 3079 14088331 ~ 14090702 (-)
XLOC_010538 trim109 coding downstream 19187 14064397 ~ 14074594 (-)
XLOC_010536 NA coding downstream 88172 13976380 ~ 14005609 (-)
XLOC_010537 si:dkey-85k15.6 coding downstream 101135 13987735 ~ 13992646 (-)
XLOC_010534 si:dkey-85k15.4 coding downstream 128263 13955586 ~ 13965518 (-)
XLOC_010541 rnf115 coding upstream 63733 14231406 ~ 14248892 (-)
XLOC_010542 itga10 coding upstream 108691 14276364 ~ 14353567 (-)
XLOC_010543 crabp2a coding upstream 215806 14383479 ~ 14397003 (-)
XLOC_010544 NA coding upstream 248673 14416346 ~ 14417407 (-)
XLOC_010545 BX324006.2 coding upstream 254127 14421800 ~ 14443389 (-)
XLOC_010626 CR392024.2 misc upstream 6727439 20895112 ~ 20895175 (-)
XLOC_010535 BX005429.1 non-coding downstream 134896 13957756 ~ 13958885 (-)
XLOC_010530 NA non-coding downstream 233217 13857672 ~ 13860564 (-)
XLOC_010531 NA non-coding downstream 234469 13858907 ~ 13859312 (-)
XLOC_010551 CT573793.2 non-coding upstream 1540531 15708204 ~ 15709144 (-)
XLOC_010552 CT573793.3 non-coding upstream 1611486 15779159 ~ 15780407 (-)
XLOC_010553 NA non-coding upstream 1618564 15786237 ~ 15786804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_06018338_06023791 NA coding CI01000016 null 6018330 ~ 6023791 (-)