XLOC_010544


Basic Information

Item Value
gene id XLOC_010544
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14416346 ~ 14417407 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020675
ATGCCAAGCACTCTGCATGTGAGTCATCCGTAAGCCTGGTTGTAATTCTGGCTGAAATGCAGTAGACTAAACTGAGCTCAAAGGGCTGACGTGTCACAGCAAGTCTTTTGGTCCTACAGTTGAAACTCAAAAAGGGAAATATAACAACACCAGATACAAATCCACCAAGAGAACACTAGATCAGCCAACAACTAGTTCTACAGACCGACATACTGCAAGTCTTCAAAAATGATTGGCTTCCTGCTacttttggcttttgttttgccTCAAAGTCAGGCAGTGGACGCAAACTCTAAGCCATGTATGCCCGCGAGGTACAACAACACTCACAATGTTTTCCTCAAACGCCATATTCCTGATGGGGTGCCGAAAACATGGGATCAGAACGCCTGGGAAGCTTTCCTGAGGAAGATTAAAACGTGTGGCAGACCGACGCAGTCGTTTTTCCGTGCCACTGAAAAACAGCGGGTGGAAAATGTGTGCAGTAAGGATGGCGGAAAGACACTGTCTGGTAACTTGTGTATCAGCAAAGAGAAATTCTCCTTCGTAACGGTGCGGATCGATACTGAAGGCGCGTGCGGAATTAGAAGCATGCGCAATGAGACCAAACATATCATCCTCGCCTGTGAAGACATAGGAGATGTTTGTCAACCGGTCCACTTCGAGGGGAACCCTGAAGGCAAAGCGCCAAGCAATAACCAGCTGGACTGTGGGGCTAAGGGGAGCTCGGGAACCATTGCGATAAACGTGCTTCCTTTGTGGTTCACTTTGATAGTGATGGCATACTTTTTGTAAGGGAAAATCTTTTATGCTACTTCGACTATATGTAAAAGACCCCAAAAAGCATGTATTTTTTTAGGCTATATGtttatatttgattgtttaattatttttgtacatATTGAACATTTTAGGGAAGTGTGCATTAAAATAAGGCCTTCTTTT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0090579 dsDNA loop formation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0051276 chromosome organization biological_process
GO:0007062 sister chromatid cohesion biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0071733 transcriptional activation by promoter-enhancer looping biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0090202 gene looping biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0000974 Prp19 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020675 True 945 lncRNA 0.44 2 14416346 14417407

Neighbor

gene id symbol gene type direction distance location
XLOC_010543 crabp2a coding downstream 19343 14383479 ~ 14397003 (-)
XLOC_010542 itga10 coding downstream 62779 14276364 ~ 14353567 (-)
XLOC_010541 rnf115 coding downstream 167454 14231406 ~ 14248892 (-)
XLOC_010540 BX322530.1 coding downstream 248673 14093781 ~ 14167673 (-)
XLOC_010539 NA coding downstream 325644 14088331 ~ 14090702 (-)
XLOC_010545 BX324006.2 coding upstream 4393 14421800 ~ 14443389 (-)
XLOC_010546 si:dkey-237j11.3 coding upstream 110967 14528374 ~ 14552199 (-)
XLOC_010547 dscc1 coding upstream 154601 14572008 ~ 14587332 (-)
XLOC_010548 mrpl13 coding upstream 635106 15052513 ~ 15097513 (-)
XLOC_010549 sntb1 coding upstream 747576 15164983 ~ 15263099 (-)
XLOC_010626 CR392024.2 misc upstream 6477705 20895112 ~ 20895175 (-)
XLOC_010536 NA non-coding downstream 410737 13976380 ~ 14005609 (-)
XLOC_010535 BX005429.1 non-coding downstream 457461 13957756 ~ 13958885 (-)
XLOC_010531 NA non-coding downstream 557034 13858907 ~ 13859312 (-)
XLOC_010551 CT573793.2 non-coding upstream 1290797 15708204 ~ 15709144 (-)
XLOC_010552 CT573793.3 non-coding upstream 1361752 15779159 ~ 15780407 (-)
XLOC_010553 NA non-coding upstream 1368830 15786237 ~ 15786804 (-)
XLOC_010554 CT573799.2 non-coding upstream 1396099 15813506 ~ 15814501 (-)
XLOC_010530 NA non-coding downstream 555782 13857672 ~ 13860564 (-)

Expression


Co-expression Network