XLOC_010549 (sntb1)


Basic Information

Item Value
gene id XLOC_010549
gene name sntb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 15164983 ~ 15263099 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020685
GAGGGGCTGAAACTATTCAACCTGAATCACAACTTTTTCCCTGTTCGGGGGTAAAGTCCTGTACGAGTGTATGAAATCACATGGCATTTTAAGAATGCTTCAAAGATGGCGGTTTGCGGTAACAGAGTGCAGAAAAGTGCATGTTTGGAGGTGCTGGTGCGGGAGCAATGGCACGCGGTGCTGGCGAGTTTAGGGGACGAGTCTCTGACGCTCAGCTGCGAGGATCCCGCGGCGGACACCAGCGTCAGCCTGAACGGCATCACCACCAACGGCTCCTACGACCAACCGGACCCCACCAACAGTCCCAAAACCGGAGCGAGAACTCCTTTTTCGGATTCACAAGTGCCCGAAGCGATTGCGAACCGCAAGAGATGCGTCAAAGTGATCAAGCAGGAGGTCGGTGGATTAGGGATCAGCATCAAAGGCGGGAAGGAGAATAAGATGCCTATTCTCATTAGTAAGATATTCAAGGGTCTGGCCGCGGATCAGACTCAAGCGCTGTACGTGGGCGACGCGATACTGTCCGTGAACGGGATCAATCTGCGGGACGCCACGCACGACGAGGCGGTGCAGGTGCTGAAGAAAGCGGGGAAAGAAGTTATGCTGGAAGTGAAGTATATGCGGGAAGCGACGCCTTATGTGAAAAAAGGCTCACCGGTGTCTGAGATTGGCTGGGAGACACCCCCTCCTGAGTCCCCTCGTCTTGGCAGTCCTCACTTCGAGCTCCCCAGCCCTCCGTCACAGTGCTTGCAGGGTGACCGCAGATGTATCCCCCTCAAAATGTGCTACATCACACGCAGTATGACTGTGCCTGACCCAGAAAACAGACAGGTGGAGCTGCACTCCTCTGATGCTAAAAACACAATAGTGATGAGACATACAGACAGCTCCTCTGCCCAGACCTGGTTCACTCTCATGCAATCCGTCATCACAAACCTCACCAACAAAGTCATCAGTGAACTACGAGAACATGCGGGCCGACACGGCATCATTGGGAGTCGAGAGATCCGACACCTGGGATGGCTAGCGGAAAAGACGGAAAGTGAAAGGCAGAGCTGGAAGCCGGTGCTCGTGATGCTGACGGAGAAAGATCTGCTGCTGTTTGACAGTATGCCACGCATGAGAGAACACTGGCTCACCCCGACACACACCTACCCTCTGCTCGCCacacgGCTGGTGCATTCTGGTCCAGATAAGGGATCACCGCAGCCTGGTGGGGAGCTGTCCTTTGCTACACGGACAGGAACCAGATTAGGAATCGAAGCCCACCTGTTCAGGGCAGAGACCTGCAAAGATCTGTCACTCTGGACCAGACACATAGTCACGGGCTGCCACACATCTGCAGAGATGATCAAAGAGGTCACCACCAGCTGCATGTATCAGGGTCAGGACTGTCGGCTGGTCATTCACTATGAGCGAGGTTTCTCAGTGGTGGCAGAAGGAGAGGAATGTTCTAGAGCTGAGCCGCTCTTCAGCTACCCGTTTGAAAGGCTCAGGATGTCTGCGGATGATGGTGTACGGATCCTCTACCTGGATTTCGGCGGGAACGAGGGTGAAATTCAACTGGACCTGCACTCCTGTCCCAAGCCTATTGTTTTTATCCTCCACTCCTTCCTCTCCGCTAAGATTGCACGATTAGGATTGGTAGCCTGAGATTGAACTGTTATAGACTGATTATTCCAACAAACCTGGGAAACTGTGACTTGCAAGACTGAACGAAGGTGATGTAGCAAAGCAGACCTCTGAATGATTTTAATCACATTTCAGTAAATGACAAACAATGTATTTTTCAGAGAAATCGTAATTCTAGTGAAACACAATTTCACATTGATTTTCTAAGAAAGAATTC

Function

symbol description
sntb1 Predicted to enable structural molecule activity. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Predicted to be active in synapse. Is expressed in epidermis; forebrain; otic vesicle; and pronephric duct. Orthologous to human SNTB1 (syntrophin beta 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0045202 synapse cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016010 dystrophin-associated glycoprotein complex cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-13 Predicted to enable structural molecule activity. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Predicted to be active in synapse. Is expressed in epidermis; forebrain; otic vesicle; and pronephric duct. Orthologous to human SNTB1 (syntrophin beta 1).

Ensembl:

ensembl_id ENSDARG00000041729

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020685 True 1849 mRNA 0.52 7 15164983 15263099

Neighbor

gene id symbol gene type direction distance location
XLOC_010548 mrpl13 coding downstream 67470 15052513 ~ 15097513 (-)
XLOC_010547 dscc1 coding downstream 577651 14572008 ~ 14587332 (-)
XLOC_010546 si:dkey-237j11.3 coding downstream 612784 14528374 ~ 14552199 (-)
XLOC_010545 BX324006.2 coding downstream 721594 14421800 ~ 14443389 (-)
XLOC_010544 NA coding downstream 747576 14416346 ~ 14417407 (-)
XLOC_010550 has2 coding upstream 106535 15369634 ~ 15387459 (-)
XLOC_010551 CT573793.2 coding upstream 445105 15708204 ~ 15709144 (-)
XLOC_010552 CT573793.3 coding upstream 516060 15779159 ~ 15780407 (-)
XLOC_010553 NA coding upstream 523138 15786237 ~ 15786804 (-)
XLOC_010554 CT573799.2 coding upstream 550407 15813506 ~ 15814501 (-)
XLOC_010626 CR392024.2 misc upstream 5632013 20895112 ~ 20895175 (-)
XLOC_010540 BX322530.1 non-coding downstream 997310 14093781 ~ 14167673 (-)
XLOC_010539 NA non-coding downstream 1074281 14088331 ~ 14090702 (-)
XLOC_010536 NA non-coding downstream 1159374 13976380 ~ 14005609 (-)
XLOC_010562 NA non-coding upstream 1003457 16266556 ~ 16270435 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_06424554_06462224 SNTB1 coding CI01000016 null 6424115 ~ 6462618 (-)