XLOC_010562


Basic Information

Item Value
gene id XLOC_010562
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16266556 ~ 16270435 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022134
TTTTCTTCGATAAGGTCAAAGTAGGGAGGCATTTTTTTCTGCTTGGCTTTATCCCTCCACACAAATGGATCCGAAAATTCTTTCAGACTGAGAAGTGGTCGCTGAACCTCTTGAATTTGATGGAAAGACTCCTTAGCATCTTTCAAAGGCCTTGAGCTCTCATCAAAACACTCCCTTTTACTCAGGCCTGCCTCTGCCTCATTATCTGATTCAGATTCAAACTCTTGGCGTCTCTTCTTAGGTGGGCCCCTTCCTCGATGAGGCTTTTGGTTGTCATCTCTAGGTGCTTCCGAGATGTTCTGACTTTCTGTTGTGAAGCTGCAGTTGCTACTTATCTCAGGCGCTTGAACAAATGGGGATGGTCCTGGTAGGCCAGCAGATAATAATGATGCTTGTTTAATTCCCAAAATCCTTCCCTCACGGTCATCATCATGGTCATTAGTAAGAGAGTCTGGATGAATCTGGTGAACTAAATCATGATACTGAAAAGGCACATGCGTGTTGACTGTCCTGCTGGTTTTAGAGATGGCAGGCTGGGCCCATGGATCTTCTCTGTGAACACTATCAAACAGTGGCTGAGGTGTACTATAACTGCTGTCCGGTTGCTGAAATGTGCTGCTGGGCTGTTCTGACTGGTTGAAGTCCCAGACCAAGCTGTCACCCCTCCCAACACTGAAGTCACCTTTCCTTCCGTTCCAGCTATCTGGTCTCCCATGGTACTGATGGTGATCCGTTTCAGGTTTCTCGCAAGTCTTCTCAAAATTCTGAACATATTCTTGGTTTATCTGGCCAGAGATATTTGGTCTTTCTTGAGCACTCCAGTTCTTGTCCACATGGGCACTCATGACCTCTAAATGGCTGGTGCTGTCAACCATGTTGCTCTGCGATTGATAGGAGACACCTTTAACATTTGGACTTTGACATGCAGCTTGTGCACTGCCCTTATAAAGTGCAGCTGATGACTCTTTGAGTGTTGACTGATTGTTAAATCCGTAAGGAAATTCTTTATTAATGCTTTCATGTGTATCAGTTTGCTGATTCCCAGAAAACAACGAGGAAGCAGGGGCGGGTTCAGCCTTGTCATTTGTTTCAAGAGCAATGGTTGAATTTTTTGGCACAACCACTACAGAGTGCAACCTCTTTAGGGAGACCCGTCCATCATCTGAATCAGAATCTGATTCTTCACTCTCACTATCATCACTGTGACATTTTCCATCATGATTTAAGGAATCAGGGTCTTGAATTTCAGGTTTAGTTTTGTCTACATTGACTTTCTCTTTACTAGGCTGAAAATCACTAACAACCAGGGCACTTGTTGATTGAGGAATTTCAACAGTTTTTTGAAGTTCATCATGGGTACCTTTAGTTCCAAAATTAGATGTGAAAGAACTTATTTCTTGATGAGATTCAGCTGCGGTGGTGTCTCTTGCATGAACTTCTACCGACTTTTCAGATGGTACTTCTGGGTCCAGTTTCTGACTACAATTATCAGGGGTAGTATCACTGAACTCTATTTTCTGAGCTAACATTACTTTTTTCACATCTGGATTCACTAATTTCGCAGGGCTTTGATATTCTGAAGTGACTTGACCAACAATGTCCCATCTAGATTTTTTAGCACTAGCATCCTTTTTGGAAATCCCAGTATTAGGTTGTTCAGGACTCCCAATATTCTGTTCAGAATCCTTTTCACATGGTTGAACAGTCAGTGTGACAGGCGTACTGATTTGACTAATGATTAGTGATGACTCATCCGACTTAGTGTTTAAAATCAAGCTTCCTTCAGGTGGTAATTCTTTCACAGAAAGAGAGTCTGTCAATGATCCCATAGTATGTTCACTGGGAGCGGGGCCTACACAAATTGATTCAGTCTGTCCTACTGTCAGAACTTCACTTTGGATTGGAACTGTGACTTTCATTCCAGGTTCATCAACCTCAGTGGGACTTCTAACTTCAAGTTTTCCACTTGTTATGGAAATAGATTCCGTCAATCTTTCAgttgtttttttactttcaggAACATTTGTGCACTTTTCTAAACTACTAAGATCTTGGTTTGAAGGTTGATGctctgcttttttatttgtttcacacAAATTAACTTTGTGGGTAGCTTCATGCATCTGTTGAGAACTGTTTTTAGATTTAGGCGGAGTACACTGATCATCAATGTTGCTGCTTTCCTTCTGAGAAGTAACTGTAACAAAGACTAATTGCGAGTCCTTTGCGTTAGTATTTAATCTGTCTGTTGATTGTCTTTCTGTTCCAGTACcaatattaaaactattgtgatcCACTAAATCGTTTTTTCTGGAAGATGAAGTCCCAGACCTAGGTGACCTGTCTGATCCTTGTGACTGACGTTTTCTTCTGTGCTCCTCATCAGAGTCAGAGCTGGTTTTATGGATCTTTTTCTCAGATGTTCGGGATGAGTCTTTTTGTGAGCTAGAGTAAGTGGATGATCGGCTTGAGTCACTACCACGAGTCCTTGTTCGACGGTGGTCATCCTCCGAGTCAGAGCTGTCACGAGACCTGCCATCAGTTCGAGAACGTGAGCTTCTCCTTTCCCGATGAGGAGAACTTCTATGGAACCTCCGCTCAGATTCATGATAATGTGACCTATCTGTCCTTGACTGTCTCTCACTTCTTGATCTTTCAGATCTGGAATAAGAACTAGTTCGAGAGCCTCGAGATCTAGACCGTGACCGACTTTTGGTCCTTCTTCTATCTCTGTCAGATCGAGAAGATCTTGAAGACATGTGCCTAGAGTCACGATCAGACTTTGAATGCCTTATCCCCTTTTCTTCATCTTTCCTATCAGTCCTTGATTTGTCTAACTCTGTTTTGGAATTGGATGATCTTTTCACTTCATTACTATGGCTttctgattttgttttgtttctgcgGTCATTAGATTTCTGGCTAGATGATGTTCTAGTTGATTGCCCATCAGTTTCTAAACCTGCAAGCTtgctgtctgaacactgttttGATTTTCTGCTTTCCTCATGCTCAGAAATAATGGAAGAATCTGTATCTTCCTTCCCAATATGGGAAGAATCAGGACCTTTAAGGCATGAGGCTATTTTCTCCTGAGGATTTTCCTCTTTGCTAACCTTTTCAGAAGAACCATCAACAACAGAGTTCTTGTGAGATTGCTGCAAGGAGTTTTCAGTTTCAACCTTTGCGGAAGATGTAATTTTATCAGATGGGACAACTGGCTCTGATATCTCTGCTGAGGCAGTGCTGACCGTGGATTTATCCCCAACAACTGTACTGCTGAGAATCTGTTTCTTAAAATGCATCTTTCCAAGAACATGCCTTGATCTGAGAGAAAAGGATACTGTGGGGGCTGTTTGGGTCTCCCCAACTGCTGGAGTATTTGTGTCAACATTCTTAGTTTCATAGGTTTGTCCTGCTTGAACGGAAACAGGTACAGGTCCAGCTTGTGATGTAGAAGAATGTTCACTTGCAGATTTCTCAGGGCTTGGTGGTGGTAGAAACACATTTTGACGTGGTTTCTTTGTCTGCGTTAAGCTGAAGGAGACCTTCTGTCGACCCTGTTCCTCAAGGTTTACTTTAGTCTTGTTTCCTTTCATCAGAAGATGGTTTGTCAATACGACCCTAGGTGCAAGGCCTTTGAATATGACTTGCTTAGGGAAGTTTTCAACCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022134 True 3673 lncRNA 0.42 2 16266556 16270435

Neighbor

gene id symbol gene type direction distance location
XLOC_010561 rbm12b coding downstream 28696 16232621 ~ 16237860 (-)
XLOC_010560 gra coding downstream 40376 16222394 ~ 16226180 (-)
XLOC_010559 upp1 coding downstream 53941 16210208 ~ 16212615 (-)
XLOC_010558 stmn2a coding downstream 84237 16165029 ~ 16182319 (-)
XLOC_010557 fabp11b coding downstream 114357 16148761 ~ 16152199 (-)
XLOC_010563 nradd coding upstream 47593 16318028 ~ 16341027 (-)
XLOC_010564 nbeal2 coding upstream 87913 16358348 ~ 16522013 (-)
XLOC_010565 CR848667.2 coding upstream 256540 16526975 ~ 16529972 (-)
XLOC_010566 si:ch211-257p13.3 coding upstream 284252 16554687 ~ 16590780 (-)
XLOC_010567 CR848667.3 coding upstream 302979 16573414 ~ 16573530 (-)
XLOC_010626 CR392024.2 misc upstream 4624677 20895112 ~ 20895175 (-)
XLOC_010554 CT573799.2 non-coding downstream 452055 15813506 ~ 15814501 (-)
XLOC_010553 NA non-coding downstream 479752 15786237 ~ 15786804 (-)
XLOC_010552 CT573793.3 non-coding downstream 486149 15779159 ~ 15780407 (-)
XLOC_010551 CT573793.2 non-coding downstream 557412 15708204 ~ 15709144 (-)
XLOC_010545 BX324006.2 non-coding downstream 1823167 14421800 ~ 14443389 (-)
XLOC_010568 NA non-coding upstream 322914 16593349 ~ 16604080 (-)
XLOC_010576 CU861451.1 non-coding upstream 849629 17120064 ~ 17120186 (-)
XLOC_010582 CR936322.1 non-coding upstream 974473 17244908 ~ 17245047 (-)

Expression


Co-expression Network