Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_010567 (CR848667.3)

Basic Information

Item	Value
gene id	XLOC_010567
gene name	CR848667.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	16573414 ~ 16573530 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020706
GTACACAGACatttcaccctgcagcccaagaccggttactgaCTGAAGGTAAacagggctgagcctggccagTAACTGGAtgaaagaccacatgggaaaactaggttgctgttagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108055

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00020706	True	117	rRNA	0.50	1	16573414	16573530

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010565	CR848667.2	coding	downstream	43442	16526975 ~ 16529972 (-)
XLOC_010564	nbeal2	coding	downstream	51401	16358348 ~ 16522013 (-)
XLOC_010563	nradd	coding	downstream	232387	16318028 ~ 16341027 (-)
XLOC_010562	NA	coding	downstream	302979	16266556 ~ 16270435 (-)
XLOC_010561	rbm12b	coding	downstream	335554	16232621 ~ 16237860 (-)
XLOC_010568	NA	coding	upstream	19819	16593349 ~ 16604080 (-)
XLOC_010569	cyp21a2	coding	upstream	31987	16605517 ~ 16619897 (-)
XLOC_010570	tnxba	coding	upstream	47712	16621242 ~ 16649764 (-)
XLOC_010571	c4b	coding	upstream	91673	16665203 ~ 16701718 (-)
XLOC_010572	uts2r3	coding	upstream	183689	16757219 ~ 16761164 (-)
XLOC_010626	CR392024.2	misc	upstream	4321582	20895112 ~ 20895175 (-)
XLOC_010554	CT573799.2	non-coding	downstream	758913	15813506 ~ 15814501 (-)
XLOC_010553	NA	non-coding	downstream	786610	15786237 ~ 15786804 (-)
XLOC_010552	CT573793.3	non-coding	downstream	793007	15779159 ~ 15780407 (-)
XLOC_010576	CU861451.1	non-coding	upstream	546534	17120064 ~ 17120186 (-)
XLOC_010582	CR936322.1	non-coding	upstream	671378	17244908 ~ 17245047 (-)
XLOC_010583	CR936322.2	non-coding	upstream	673692	17247222 ~ 17247363 (-)
XLOC_010592	NA	non-coding	upstream	1131300	17704830 ~ 17706764 (-)

Expression

Co-expression Network