XLOC_010568


Basic Information

Item Value
gene id XLOC_010568
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 16593349 ~ 16604080 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020707
ATACTGTCTTGTTCTTCACTTTGTTTAACAATACTGTAATTTTTTAGCAATAAACGCATAAAATATTTGTCATGCCAGTGCCAAAGCGCTTACACTGGAAACTGTGAAAAAGAGATAGTTTTATATAAGTATACTAACAAGTGTAGGCTACATCATTCTCATTTATCAAAATATTGGTCACCAGTCTGTAACCTTTGGTGCTGTTCCTCTCTCGTCCTCTAGAGGGCAGAACACACTCCACCACCAGCTAAACGCAGATCTGCACACACTTCCTGTGATTGCTCGAGTTGTTGATAAACAGCGAGCACATGCTGGAAACTGTTTCTGGCATTTTGTCTTTGAACAGATCGACTGATACTTGTATTTAACTCCTAAACCAGTAGTGTGACGATCTGTAGTCTGCCATGTTTCTGCAATTACACGCTGAACAATGAGACTTCTCTGCTCAGGACACTGATGGATTTTATAAAAGAGTTTACTACAGCTGTGACGCACATCATTTTGTCTGTCTCATCACTCAATGCTGCTTATTGGCTGTTCAAGaATCACAGAGCATCCTCATTGGGCTTCCTCCTGATCGGCTGTTCCTCCATTCTTTCATTCTTATCTCCCACTAACCATAACATCACGAATGATCTGAAATGGGCAGGTGAATCACTTGGACCTGTGTTTTTTACATTTGACCTTCTGTGGCTTAGTGACGACCACATCACAGCCCGCATCCTCCTGATTGGCTCCAGTTTTTTCATAATACTGTCTGATTGGCTGTCGTCAGATGGATTGGTCATTATGTCCCGCTGCCTGGCCTTTTCTACCCTTTCCTGTTCGCTGACAGTGTGTGCTTTTGCTGAAAATGTTGCAGGGGCAGTGGGAAGTGTTGCCCTCAGTCTCCCTTTATTAGTTTCCCCAAGGAACAGATCTGGAGCTTTGGGTTTCCTTATGTTGCCTACTGAAGGACTTCTCAGAGGGATGCTTAATGTCATAATGGCATTTGGTTGCTGGACTACCAGAAAAGCCCTTAATAAATTCCTGATTGATTTGAAAAGCTGGGACTGACTTGGGAGGGAAGAAATGGTTTCCAAATACAATAGACCATTTGTTCTCAGGTTATTAGCATATATATGCACTGCTAATGTGGATTGTTGCATGTAAAGGCCTTCTGTCATAATAAGCTAATGTTGCAGTACTGTATGTTATACTACACAAAGTAGAGTTTGCTTATAACCTATTAAATCCATTACAGTGACACTGAAGGCTAGTAAAAACCTTTAGCAATGAATAAATAGTTCAGCATCATGAACAATACAGCTCTTTGTAAAGAAAGAATGGGACTCTGTTTGGACCAGTGTTGCCATGACCGCATATTATAATTTGGTTGCCCATGGCAAATTTGCATACTACTTTAAATTCGATAGTTTCCTTAAATGTCAAATTGCAACATACAGTAACCCTGTTTATGCAGTTTTGGATTGATtatcacaaaaataataaatacatcctgggtacactcttaaaaataaaggttgttTATTGGTAGTTATATTTCAatgaaaaacattaaacattcatGGAAGGTTTCTATTACATAAAAGGTTCTTTATGGGGAATGTTTTTTTGATACAAAAATGGTCCTTGTTACATTCCCTTAATTCTGTCTAGGGGAAAACAGGTACGCAGTAGAATGTTagtggagtttgtgtgtgtgtcagcaatgAGGTCCCATGAGGATCTTCCCAAAAGACTAAACGAAAGAAATTACGCAGAGGAATACTCacaatgcaaattaaataaagaataatcaGATATTTATTCAACGATTAAGGGAGGGTTTCAAGAGGGACTTcaagcaaaaacaacaaacaaaaagtttTCAAACTGATAGAAAGGGAAGAACTAAATAATCtatcaaagaaaagaaaaatacatcaaaataccCTCACTCCCTTACTAACATAAACAGGAGAAAAAACTGTTATAAACTGAAATATGGCACCCCCTCTCTACTAACCTGATGccaagttaaaaaaacaaaaacaaagtaaagGGTCAATAATGAAGTAGGATTGAAAAATCTAAAGGAAACTCACAAAACTACATTAGATTGACAACAGCTTTAACAGaaattaaagggtcatgacaccccgcactttcggttcaggtctactaGTATTTTTTCAAAAGATTCATCATGATGGGTtgtgttgtcagttagctcacaaaatgagacgcaAACCGCAAGGAGACGCATGACTTtacagtttacaaagttaaaatgcaaagaaataaacagtaattatatGCCCTGCtagatttgttatttgttatttgatatacacacaaccacaatttatatcattattaagATAATCATGTTAAtttttccctcaatccccaggtctgaatgtagactcagtgcagcaggtctctttccctgtctattttaaccattagccctgttggtaatctggaggatttaggcgaacacagcagcacggcaatgtgtctaaatgtgaacgaactcctgataaaagacaacgtctgcCATTCTCAAATTCTTTTACTGCTcttctgacaaaaatgcttgcagcacacacacagctttgctgtatcggccctgatagcattgcggggaaaaacatgcaacaaaccccatggatcatggaaacaaacacacacgacccttcatgaacggcaAAAGAATGAAGAATAATTAAgcagcaggctcttctcataggataagaaaactccgctataaataataatgagaaacagaCGGGTCATCTTTACACTTGCAGTTTTTTACTACATCgccaattttgatcccgccccaaaaattattttaaacctggaagctgaaattagcagaaagaagctcaaaattatccagtttcccccacaattaatgctaacattgtcttaactgatgctcaacacacacaagtctgttaacatctcaaaaaaagtactcgagggttttgtgaatctttaaacaaatgaagGCTCCTAAACAACACATAATGCTTTAAAggacaaaaaatgtaaagcctcaCAAAAGAGCcttcacacacacagaacacactaACTGCGTCCAaaactactcagtaggtactgtattttaatttaaacatactacttggCCATTTgaaaagtacgctctatacagtatgaatgtgagcagcatgaatggaatttggacgtactacaactatattttgtcatggtcacatgacctagtTGCGTctcttcactcccattcataaattctctctaGGGGAcacactagagtttaagcttGTGAAATTCAtacaagatgattagacaattaaaaaagtgagcgattggtccatatttttaatttctgtccagagagggcatgttttgatcctcgattggtatcacgcagtcaagtgatgcgattttgcaggtcagagttcaccaagcttaaactttccaaCGTAAAGTTCTGTGAAACTTGACGCACgagcttgcgtgtgtgtgtgtgttaaatacctttttttaatattttctttaaaaaagttgaAACGTTACTTGTTCAATTctgaatcaaaatattaaaatactttcTGAAATCTGTGTATTTGTGTCAGGAGGCaaagaaaattaattttaatctgttcAAATAAAGCACTatcaacatttttctttttaaactgaaaaacgtAAAAcctaaagacattttttaaatcttgacatttttttaatcaagCCAATGTTTTTGATTACGGCTGTGCATCTGTATTGCATTGAGTCAACATCTGGCACACAGAAACATATATTCCCACCCAAGATGATTTATGTATGTCACACATTTCTGGTGAATTTTTGTCTTTTGCTTCAGAAACTTCATTTTAATATCAGCCCATGAACTTTCAATTGGTCAAGGGATTGAGCTGGCCACTCCATTGCCTAAATCCTTTTTGCCTGAATTCAAGAGGTTGCTTACTCTTGTTTTGAGTTTTCAGTTTAGGGGATTGTAATCTTATTTTGTTAAAACTGCTCCATTGTACTTAGTAAACGATAAATACTAAAACCACACTATGAAAAACGTTCCAATATCTTGATTTTTGTGCCACCAGCCAAAATTGAGGACTAGTTCAGTATTTCTCGATGGGCACTATTTAAAACaacaaccattttaatcacatctCCAAACTTTCATTAACTATGCATATTCtcacctgcactgtaaaaatatttgatCAATTAGTAATGACAtagtaacttattaaactaagctaATCATGTTCTAACTCAATTTTAGAAGTTACAGAAGCTGTTTTaagtctgtttaacataatttaaattcaattaactcacaaggttaatttaattcagcttaataATTTATGGCaaccatgatttttttaaagtgtagattTAGTGCCAGCAGATCAACACTATGAATACAAAACTGTTGAAGTAATTCTCCTCAATAGCCATAAAGCATTTATATTTTcagaattataatatttaaaataggcaaagGGAACACGATGAGGATTGGCCATTACAGTCAGCATTTAACTGGCCTGGGGCCTGAGCATAAGGCTCTTTTATTCATGCTGACTGATGATCTTCACTGGAACTTTGCAAAGGTTTAATCAATAGACAGAGCAGGGTATCAATAAAGTGTCCCATTTGTTTTAAACTAATATCAGCTATGTGAAATACCTTTACATCAAGAAACCCCTTTAACATCTCTGGTTTGTGGTGCAGGCTAAAGGAGGGGCTTTTGCTTTTTACTCCTACAACTGATTATTAAATTGATTTGCtcgtatttttcaaaatatactgACTGTCAGTATTTGACCtagatttttaaatcattttgctTAGTGGGTATTAAAACAGATATACCTAGGCCTTTCTTTCCGCTAGCTGTAAACGAGTCATCTGGAAACACCATAGGTACCAAAGAGCAGGTACTGTACAAACAACATAGAACATACAGTAGCAGAAAACACCAACCAGGCATTTACAACAGCAAACATATATCCTCTATAGCCTGAACACCTTAGCAAAGCATTTACAGCATCTAGCAACAATATCAAAaagctgtatttttatattatgtatatatttttactcCCACGCAGCTCATTGTGATCCCTCAATTTGAAAATACCTGGTCTAGATCATTGAAGTAAACAACTTCACACTTTACAGAACACTCTTGCAAGCACATAAAATGTTTGCAACACTGTATTGAacattcacatttttactgcattggctttttgcaattctaatttattcacagctttgtgtaaatcattcatgaactTGTTCAATTTAGAGGACATTttcagggaaaaaaagattttaaaaatgttctaaAATTAGCTGATTTTGACAAactatttttgtatgtaatgactcaagtaatgaaataagGTCTGTTAGTTTataatgactattcagcattcacaagtttagttaattctGACTGGCATGACACTGTAAGTAAATAAGAATGTTATATAACAGCAAAGAGTTGTACAAAAGCAATTGAttcatgtccaaaagcatttgcaatttgtttaaAGGAATGAGAAACCCCTACTATGATGTGCAGAGATGagtaattgttttgagaaatgcattaattgttttgcaaatgtaaatagtgttgtgagaaatgcaccaaagccactgagaaaaactgtaacaaagACTCCAGTGTTCAAAAC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:1902494 catalytic complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020707 True 5711 lncRNA 0.36 3 16593349 16604080

Neighbor

gene id symbol gene type direction distance location
XLOC_010566 si:ch211-257p13.3 coding downstream 2569 16554687 ~ 16590780 (-)
XLOC_010567 CR848667.3 coding downstream 19819 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 coding downstream 63377 16526975 ~ 16529972 (-)
XLOC_010564 nbeal2 coding downstream 71336 16358348 ~ 16522013 (-)
XLOC_010563 nradd coding downstream 252322 16318028 ~ 16341027 (-)
XLOC_010569 cyp21a2 coding upstream 1437 16605517 ~ 16619897 (-)
XLOC_010570 tnxba coding upstream 17162 16621242 ~ 16649764 (-)
XLOC_010571 c4b coding upstream 61123 16665203 ~ 16701718 (-)
XLOC_010572 uts2r3 coding upstream 153139 16757219 ~ 16761164 (-)
XLOC_010573 plekhg6 coding upstream 403009 17007089 ~ 17056630 (-)
XLOC_010626 CR392024.2 misc upstream 4291032 20895112 ~ 20895175 (-)
XLOC_010562 NA non-coding downstream 322914 16266556 ~ 16270435 (-)
XLOC_010554 CT573799.2 non-coding downstream 778848 15813506 ~ 15814501 (-)
XLOC_010553 NA non-coding downstream 806545 15786237 ~ 15786804 (-)
XLOC_010576 CU861451.1 non-coding upstream 515984 17120064 ~ 17120186 (-)
XLOC_010582 CR936322.1 non-coding upstream 640828 17244908 ~ 17245047 (-)
XLOC_010583 CR936322.2 non-coding upstream 643142 17247222 ~ 17247363 (-)
XLOC_010592 NA non-coding upstream 1100750 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 1219367 17823447 ~ 17824848 (-)

Expression


Co-expression Network