CI01000071_00807216_00807677


Basic Information

Item Value
gene id CI01000071_00807216_00807677
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 806831 ~ 808142 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_00807216_00807677.mRNA
CTATAAAAATATGCTGTATGAAAATAGACAGCAGAGTAATATGAGAGACATAGTAGTACCAGCATGTTGCAACATGGAAAGGTCAAATATCTTGTAATTATATACAAATACTGACCAAACAAAATCAAAAATTGCAGAGTGACCTGCATTTTGTGCAAAAAAAAAAAAAAAAAAAAAAATTGGATGGCAATTTTATTTATTTATTTTTTTTTAAATGCCCCAATAACACATATTATGGACAAATTATTTAATGCATAATCGTAGTTGAAACCAAAGGGCCTTCACCTGGATGTTGATGTTGGTTTAACCCGACGGCATTAGGACCTTCCAGAAGCGCCGTCGATCTGCGTGGATTGGGTTGCATCCATCTCACTGTTCTGCGACAATGTCAGCGCGCCTGATCTCTCTCATCGCTTGCTGCATAACGTTTTTCCAATATGGAAATGCACAACTGGGAGAGTCTAAAGTAAATGACAGACCTTATGAAGTCCTGCTGAGGCAAAATTTGGTTCTTCTTTTAAGTGTTCTGTCCACACTGTTGGTGATCATGATTGGGATGGCAGTTTGTGTCTACAAACCTCTTCGACGCAGGTGACGAGCCCTGTGGATGAAAGTCGCCGGGAACTGAACACTACTATGGCGAAGGCTTGCTTCTGAATATTAATAAGCCAATACATAGCCATTGGACAAGAACAGCGCAACGTCAGCACGAACTACTTAATAGTCGGGATCCAACACTTCGCTAATGGAAGGTTACAAATTAACGTCAGTATGACCAAATTAATATTAAACACTCCATGTCAGTGGAATCGAGGCTAAATATCCATGAGGATCGTTTAAGACAAAACCTTATAATTTACGTTGTTAAAATTGAACACTATTTTAAACATACATACTACAGCATGTCTTTTTCTTAATGTGGACAGTGTAAGCTGCTAAATTGTTTACTGTCTGAATTTATATATATTTATTTTTTATTTAATTTTATTTTGATGTATTTATTGCAAGATGTTTATTTAACAGGTTTTGGCATGTCAGACCTCTTGAACAGGCCTACTGA
>TU318005
CGTCGATCTGCGTGGATTGGGTTGCATCCATCTCACTGTTCTGCGACAATGTCAGCGCGCCTGATCTCTCTCATCGCTTGCTGCATAACGTTTTTCCAATATGGAAATGCACAACTGGGAGAGTCTAAAGTAAATGACAGACCTTATGAAGTCCTGCTGAGGCAAAATTTGGTTCTTCTTTTAAGTGTTCTGTCCACACTGTTGGTGATCATGATTGGGATGGCAGTTTGTGTCTACAAACCTCTTCGACGCAGGTGACGAGCCCTGTGGATGAAAGTCGCCGGGAACTGAACACTACTATGGCGAAGGCTTGCTTCTGAATATTAATAAGCCAATACATAGCCATTGGACAAGAACAGCGCAACGTCAGCACGAACTACTTAATAGTCGGGATCCAACACTTCGCTAATGGAAGGTTACAAATTAACGTCAGTATGACCAAATTAATATTAAACACTCCATGTCAGTGGAATCGAGGCTAAATATCCATGAGGATCGTTTAAGACAAAACCTTATAATTTACGTTGTTAAAATTGAACACTATTTTAAACATACATACTACAGCATGTCTTTTTCTTAATGTGGACAGTGTAAGCTGCTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_00807216_00807677.mRNA False 1060 mRNA 0.37 2 806831 808142
TU318005 True 604 lncRNA 0.42 2 807168 808023

Neighbor

gene id symbol gene type direction distance location
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 coding upstream 3702 791346 ~ 803317 (+)
CI01000071_00707882_00708320 NA coding upstream 97556 706888 ~ 709581 (+)
CI01000071_00544529_00545575 FOXD1 coding upstream 260990 544249 ~ 545841 (+)
CI01000071_00531716_00534432 ANKRA2 coding upstream 271869 530382 ~ 534962 (+)
CI01000071_00335696_00339048 NA coding upstream 467258 335049 ~ 339573 (+)
CI01000071_00825247_00853236 GIT2A, GIT2 coding downstream 16797 824939 ~ 853754 (+)
CI01000071_00867024_00871868 NA coding downstream 58699 866841 ~ 873319 (+)
CI01000071_00880705_00897817 TRPV4 coding downstream 72563 880705 ~ 898445 (+)
CI01000071_00923006_00927912 NA coding downstream 114610 922752 ~ 928488 (+)
CI01000071_00965582_00968758 NA coding downstream 156859 965001 ~ 969361 (+)
G280413 NA non-coding upstream 30720 737965 ~ 776111 (+)
G280411 NA non-coding upstream 79461 726653 ~ 727370 (+)
G280341 NA non-coding upstream 158175 648064 ~ 648656 (+)
G280373 NA non-coding upstream 245609 560987 ~ 561222 (+)
G280449 NA non-coding downstream 90676 898818 ~ 899610 (+)
G280477 NA non-coding downstream 94725 902867 ~ 903174 (+)
G280478 NA non-coding downstream 95641 903783 ~ 904013 (+)
G280479 NA non-coding downstream 96490 904632 ~ 904864 (+)
G280505 NA non-coding downstream 133253 941395 ~ 943005 (+)
G280443 NA other downstream 97075 905217 ~ 922096 (+)
CI01000071_01374449_01376813 NA other downstream 566441 1373996 ~ 1377670 (+)
CI01000071_02815324_02834097 NA other downstream 1996502 2815127 ~ 2835525 (+)
G282080 NA other downstream 2247942 3056084 ~ 3056531 (+)

Expression


Co-expression Network