CI01000071_00825247_00853236 (GIT2A, GIT2)


Basic Information

Item Value
gene id CI01000071_00825247_00853236
gene name GIT2A, GIT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 824939 ~ 853754 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_00825247_00853236.mRNA
CTATAAATGACATGAACAACATTTATTTAATTTGATAAACGTGTAGAGAACAGTTTCGTAGGCCTCATTTGTACTGATTTTAGGATAGACCTTCTTCACAGGACTTTCTGTCCTGTGATTTGTTTGGTTATGTTCTGTGGTTCAGTTTTTCAGCTCATTCCCCATATTGATTCCTCTTGATTAGTTACGCCTCAGTCACCAGCTGGCCTGGGCTGCCCCAACATGTCAGGATCATTGGGCAGTTGTTGTTAGGGTGAATATTTTTAGTCATTCAGCACTGAGTTTTATTTTAGCTGCTGCAGCACTTGATGGGGAAGAGAGCAGCATTTGGCTCAGAGAGAACGAAAAGGAGAGGGAGGGAGAATAAGGATCCTCGCTGGGCGTCTGTGAACAGAGGAGTTCTGATATGTGACGAGTGCTGCGGCGTTCACCGCAGTCTGGGCCGACACAACTCGCAAGTGCGGCATTTGTCACACACCTCCTGGCCGCCTACCCAGCTACAGATGGTTCAGACATTATACAACAATGGTGCTAATGCAATATGGGAGCACACTCTGCTGGACCCGTCATCCATCATGAGCGGGAAACGCAAAGCTAATCCTCAGGATAAAGTCCACCCCAGCAAGGCAGAGTTCATAAAAGCAAAATATCAAATGCTGGCTTACGTCCATCGTTTACCATGTCGAGATGACGACAGTACAGCAGCCGCTGATCTAAGCAAGCAACTTCACTCCAGCGTTAGAACCGGCAATCTTGAAACTTGTTTGCGGTTACTGTCACTTGGGGCTCAAGCCAACTACTTCCACCCGGAGAAAGGGAACACCCCGCTGCACATAGCAGCTAAAGCAGGGCAAGTGTGTCAGGCTGAGCTTCTTTGTGTTTATGGGGCAGACCCTGGGGCTCCAGACTCCAACGGCAAAACGCCTATCAACTATGCAAGGCAGGCTGGCCATCAGGACCTGGCAGACAGACTGGTGGAAATACAGTATGAGCTCACAGACAGGCTGGCCTTCTATCTCTGTGGGCGGAAGCCTGATCACAAGAATGGACAGCATTTCATTATACCACAGATGGCGGACAGCAGTCTGGAGTTATCGGAGTTTGCAAAAGCTGCAAAAAGAAAACTGCAGTCTCTCAGCGATCATTTGTTCGAGGAACTAGCAATGGATGTGTACGATGAAGTGGATCGAAGAGAGACAGATGCAGTTTGGCTGGCCACTCAGAACCACAGCACCTTGGGAAGACAAAAACTGGCGAGGTTCAACGCTCATGAATTTGCCACACTTGTGATTGATATTCTAAGTGATGCAAAGCGACGCCAGCTCGGGAATTCAGTCTCAAGTCCTAAAGAAAATGTCGAGGTGTTCTTCAAGAGTATGGGTAGTCGTCATGGAAGTGAAAGCCAGGAAATCGACCAGCCAGACTATGACAGCGTGGCATCAGATGAGGACACAGACACTGATTTACGAATAGGCAAAGCAGACAGAGCTAAGAGTCTGGACTCTGATCTGTCTGATGGACCGATTTCGGTGCAGGAGTTTCTGGAGGTGAAAAATGCACTTTCAGCCTCAGAGGCTAAAATTCAGCAACTGATGAAGGCCAACAGTAATCTGAGTGAAGAGCTGAGATTGATGCAGAAAAAGCTGCAGTCTCTGCAAAGTGAGAACAGCTCTCTCAGGCGGCAGGTCTCCGCTCAACAACCCTATCAGGCCCCCGGCGGCCCTGACCACCCCAATCCCTCCAGTCCCTCCTCCTCTTCCTCCTCCTCTGCCCTGAAACGTCACCTGTCTGCACGGGCGAGCCGCCCCATGTCTATGTATGAAACCGGCTCTGGTCTGAAGCCCTTTCTCCCCAAGGGAGAGACCCCTTACCCTGAGGAGACTTTCCCCACCCTGCAACCCTTCCCAACCTATGCCTCCAAATTTGACAAGCAGAGCAGTGTGTCTGATGGTGACTATGATAACACGGTCAATGAATCCGATCTGGACGACTCTGGCTTTGGCCGTAGATGTCGTCTGCGCAGCAGTGGCTGGTTGGGAGAAAGCGGCTCTATACCCGAGCTGGATGATCAGGAATGTGAGCCTGACCCCAGTCTGCCCACCACAGAAGACGTCATCCGTAAAACTGAGCAGATCACCAAGAACATCCAGGAACTGCTGAGGGCTGCACAGGAGAACAAGCATGAGAGTGGACCATGTGAGCAGAGGGAGAGTGTCCGCAGACTTAGACACAGTCTGGGTTGTTTCAGCACACTGGTGCCTTGGGCAGACAAGCCCCCGTCTCCCATGCAGTCCCTCGGCCTCAGAGCTCCCCACCCAGCCAACCCCAACAACCCTGCCTCCTGCTTTATACCCTGCGCAGAAAGAATACATGTGGCTGTAAATGAGATGGCTGCCCTCTTCCCCAAGAGACCACGCTCTGAGACAGTAAGGAGCTCTTTGCGATTATTAACATCCAGTGCAAACCGCCTGCAGAATGAGTGTAAGAAAGCGTCTCCTCTGGAGAGCAGCTCCGGAGCCGACATGCAGTTGGTCACCCAGCAGGTCATCCAATGTGCTTATGACATCGCCAAGGCTGCTAAGCAACTTGTTACCATAACCACCAAAGAGAACAACAACTGATCCTGCTTCCACCCATTTCCAACTGTAGTGCAACCCTGATGGTTTTCTCCACGTTATTTTATTAGTAATTTTGTCAGTTGAGATTTTTTTTTTTTTTTATCCACGCTGTATTTGCATGTTTTTATTTCTAATTTAAAGTGTCTCTTTGGCTTGAAGCCATAAGATAAAGACTGAAATGCTCTCAAGGGTTGTGTAAGGACGTGTGTATGTGTTGACCCGTGAAAGTGTATTTGACTAGATGTTGTGAGCAGAAGTGGAGCAGCCAGTCACTAAATATTCAGTAAATGCCTGACTCTTTGCACTATTCTGAAAACTTTAACTGCTTTTACCTCTTCATAATCAAACACTTAGTCCATAATTTGTGGAATATTTGTGTTGTTTTTGAATTGTTAAAATTAAGCTTTTTTCCCCCAATGATAATCTTAATGAAATCTAAAATATGTCAAAAAATATTATTATAATCTGTACAAAACATTCAGGTAGTGTGGTCAGGTAGGCCAAGTTTAGGTACAGATACA

Function

symbol description
git2a Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within cell migration involved in gastrulation and regulation of cell morphogenesis. Orthologous to human GIT2 (GIT ArfGAP 2).
git2 Predicted to enable GTPase activator activity and metal ion binding activity. Predicted to be involved in presynaptic modulation of chemical synaptic transmission and regulation of synaptic vesicle exocytosis. Predicted to act upstream of or within behavioral response to pain. Located in nucleoplasm.

GO:

id name namespace
GO:0022604 regulation of cell morphogenesis biological_process

KEGG:

id description
K12487 GIT2; G protein-coupled receptor kinase interactor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_00825247_00853236.mRNA True 3139 mRNA 0.48 20 824939 853754

Neighbor

gene id symbol gene type direction distance location
CI01000071_00807216_00807677 NA coding upstream 16797 806831 ~ 808142 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 coding upstream 21810 791346 ~ 803317 (+)
CI01000071_00707882_00708320 NA coding upstream 115664 706888 ~ 709581 (+)
CI01000071_00544529_00545575 FOXD1 coding upstream 279098 544249 ~ 545841 (+)
CI01000071_00531716_00534432 ANKRA2 coding upstream 289977 530382 ~ 534962 (+)
CI01000071_00867024_00871868 NA coding downstream 13087 866841 ~ 873319 (+)
CI01000071_00880705_00897817 TRPV4 coding downstream 26951 880705 ~ 898445 (+)
CI01000071_00923006_00927912 NA coding downstream 68998 922752 ~ 928488 (+)
CI01000071_00965582_00968758 NA coding downstream 111247 965001 ~ 969361 (+)
CI01000071_00971517_00971823 NA coding downstream 117283 971037 ~ 972217 (+)
G280413 NA non-coding upstream 48828 737965 ~ 776111 (+)
G280411 NA non-coding upstream 97569 726653 ~ 727370 (+)
G280341 NA non-coding upstream 176283 648064 ~ 648656 (+)
G280449 NA non-coding downstream 45064 898818 ~ 899610 (+)
G280477 NA non-coding downstream 49113 902867 ~ 903174 (+)
G280478 NA non-coding downstream 50029 903783 ~ 904013 (+)
G280479 NA non-coding downstream 50878 904632 ~ 904864 (+)
G280505 NA non-coding downstream 87641 941395 ~ 943005 (+)
G280443 NA other downstream 51463 905217 ~ 922096 (+)
CI01000071_01374449_01376813 NA other downstream 520829 1373996 ~ 1377670 (+)
CI01000071_02815324_02834097 NA other downstream 1950890 2815127 ~ 2835525 (+)
G282080 NA other downstream 2202330 3056084 ~ 3056531 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030958 git2a coding NC_007116.7 CM002889.2 19886055 ~ 19932621 (-)