CI01000071_00923006_00927912


Basic Information

Item Value
gene id CI01000071_00923006_00927912
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 922752 ~ 928488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_00923006_00927912.mRNA
GGATAAATAGCTCTTTTTTAACTTGAAATCAGGCACCTAAGGCATTATTAAACCAGTGCTTTGTGAAATTAATTTGGCCTTTCTATTGTTCAAAATTGGGTTACCCTTGGAGACGGAAAGGAGAGCGAGCAGGAAGTAAGGAGGATAAAAGACTTGTTTAATTGCACTGACACATTTGAGATTTATAAGTAGCACCAGTAGGTCTTAGCCCTGGCCAGGCCAATTTCTCAATTATTCAATCAGACCATCTCCAAATGAAGAGACAGACCTACATTACCCCTCCCACAAACCCCCAAAAACTCTACTCCCTGGGAATTCGTAACCGGGTTTTTTTCAGCCTGTACAGAGAAACTGGTTTTGAATTAGGCGTTTTCAGAGAAACCTGGGGCTTTTGGGATTCTGAGAAAAACGAGTTGGGGAAACAAGGAGAAAGAGCAGCGAGAGGCAGTGCAGAGGATGAGCGGAGGCAAAAGCCTCCAGCACCTGACCTGCCATCAAAGGGTTTCACACTTCACAGGCCACAGGGATTAGATGCCTTTCAGACCCATAGAGAGCTGCTCCAACCCACAAAGGCCTCTGGCCATTACTGCAGCTATGAGCACAACGCAGGAGAGAGAAAGAGAGGTTTGAGCGAGCGTATTCAGTCATGCATTGTGCCTTTTCCCTCTTCTGGCATACGGACAAATGATCCCATCCTGCCAGGCACAAAGCGCTCGGGGAGGACGGGAGGGGAAGATTGCGGGAAACGGGATGGCAGGGGGATAATTAGCGGAATGACCTCTGTCCTTAATCACTCGCGGCTGGCACTGAGTGCCCGTGTGTCAGAGCGGCAGTTCTCTAAATGCCATCTCTCATTACCGCCGACGCACACCAACCAGAGAGGACTTGCACATACACAAAAACACATAAAGACAACAGGACCTGATCTCCGCAATCTCCCTGCCATCCCGCTGCAGTCTCACATGGCAAACGGACACCTGCAGGCTGAACACTGACGTCCTGTCATGGGGTAGATGGGTCAGGGTGAGCGGGGCTAGGAAAGGCCTGGGTCAGCTTTGGATGCAGGTGCAACGGAAGCCATACGGATAACGCACGTCCTTCACGCTGCCTGGACCGCCCTTGAGCGAGCAGGCAGTGTGGAGGAGGCATAATCCTAAATACTCAATTAACACTACTCTAATTAGCAGCAAGAGTGCGTGTGTGCTGGAGGGGGGCATCAGAGGGATATGAGTGAATGTGAGGGGGAAGAAAATTGCAACTGGAGATCCTAAAAAATGGGAATTGTCTATGTAGGCTGTTTATTCGTTCTTTAAAGCAATGCATCAAGGCAAAGAAAGAAAAAGAGAGCGAGTAAGGGGCCAGATGTGTGCATGCATCCTCAGGGAGGCGTCTGCAGGAAATGATGCAGAGATGAAAGAGAAGTGGTGACACAAAATAACTGAATATTTTCAGAGCGTCGCATTTACAATTAACTTCCCACGAAGAGTAGCACTCTACAGAAGCACAGATGACGTTGAACACTTCAGCCCTATAAATATGTGAAGCATCTGTAACGGTTGAGAAGTGAAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_00923006_00927912.mRNA True 1571 mRNA 0.48 4 922752 928488

Neighbor

gene id symbol gene type direction distance location
CI01000071_00880705_00897817 TRPV4 coding upstream 24307 880705 ~ 898445 (+)
CI01000071_00867024_00871868 NA coding upstream 49433 866841 ~ 873319 (+)
CI01000071_00825247_00853236 GIT2A, GIT2 coding upstream 68998 824939 ~ 853754 (+)
CI01000071_00807216_00807677 NA coding upstream 114610 806831 ~ 808142 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 coding upstream 119623 791346 ~ 803317 (+)
CI01000071_00965582_00968758 NA coding downstream 36513 965001 ~ 969361 (+)
CI01000071_00971517_00971823 NA coding downstream 42549 971037 ~ 972217 (+)
CI01000071_01086147_01088260 NA coding downstream 157659 1086147 ~ 1088399 (+)
CI01000071_01113148_01115596 KCTD10 coding downstream 184660 1113148 ~ 1116722 (+)
CI01000071_01139373_01146663 FOXN4 coding downstream 210576 1139064 ~ 1146678 (+)
G280479 NA non-coding upstream 17888 904632 ~ 904864 (+)
G280478 NA non-coding upstream 18739 903783 ~ 904013 (+)
G280477 NA non-coding upstream 19578 902867 ~ 903174 (+)
G280449 NA non-coding upstream 23142 898818 ~ 899610 (+)
G280505 NA non-coding downstream 12907 941395 ~ 943005 (+)
G280537 NA non-coding downstream 82044 1010532 ~ 1010771 (+)
G280558 NA non-coding downstream 126310 1054798 ~ 1055116 (+)
G280560 NA non-coding downstream 130501 1058989 ~ 1059265 (+)
G280561 NA non-coding downstream 131193 1059681 ~ 1059906 (+)
G280443 NA other upstream 656 905217 ~ 922096 (+)
CI01000071_01374449_01376813 NA other downstream 446095 1373996 ~ 1377670 (+)
CI01000071_02815324_02834097 NA other downstream 1876156 2815127 ~ 2835525 (+)
G282080 NA other downstream 2127596 3056084 ~ 3056531 (+)

Expression


Co-expression Network