CI01000071_00965582_00968758


Basic Information

Item Value
gene id CI01000071_00965582_00968758
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 965001 ~ 969361 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_00965582_00968758.mRNA
AGATATATGCAGGTCTTAAAAAACAAAGGTCCATACCAAAGTTATAAAGTTTGGGGTCGGAAGATGTATTTGAAAGAGGTCTCATACTCACTAAAACTGCATTTATTTGATCAAAAATACAGTAAAAACAGTAAGATGAGACTAAAGGTCACCTGTGACCTTTCCACTGTGATTACGTAATGCGTGGCGCATCGCAGAGCTAGTGCAAGACGAGCATTTGTGGTTAAAAAGTTTTGTTTTTTTTTTGTTTTTTTTAAATGACAGATTTTTCGCTAGATAAGACCCTTATTTCTCGGCTGGGATCATGTAGAGCCCTTTGAAGCGCAACTGAAACTGCAATTTGGACCTTCAACCCGTTGGTAACTGTTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTCCCTCAAAATCCTTAATTTCTTTCGACTGAAGAAAGAAAGAAACATCTTGGATGACATAGGGGTCAGTAAATCATCAGGAAATTTTAATTATGAAGTGAACTTATCCTTTAAATCATTTATTAAAAACCAAATAGGGCCCATTTTGATTTAATGTAAACGGAAGTATTATGTTTTAAATGGGCAGCACAGTTTGTCCACAATCCAAACACAAATACAGACCTCAGTGTCCTAAAAGGACAGTTTATGGAGATTTCAGCTGCACAGACAGATCCAGAGCTTCTCCAGTGTCTCGCAGGAAGAATGATGTCAACTGTGCAACTATCTCAGATGTCCCCTTTGAAAGCCCTGTTCCAGACTTTCTCTCTCTCAATAGAGGGAATCTGAAAAGGGCTGAGATGAGAGATAGATGTGCTCAGAGCCTGGGTGTCTGGCCCTCGTATAAAACACACAGCCAAAATATCCAGAGAGGGCACCGTTTGTACGAGGGACAAGGTGACCCTGTCTCCCGGGAGCCTCAAAAACATGTTTTTCTGGAAAGGAAATTCAATGGAGCTTCATCCCTGAGCGATCCTTGGGAGAAACCCCTATCGAGTAGCAACACTCTGTGCATCACTGAGCCCAGCCAACCCTGTCTGGAGCTTTCAGCCCGCTGGATCGAGTTTCCTCAGATTAGATTTCTAATATTGTGCGCGTTCAGAAAGCTTCGGTTTCTCCTTAACAAAGAGAACGAGCCCGTTATGTTCCCCCCGTTCGCTCTTTTTCAGAGTGGTCTCCACAGCGCGCTCTCAGATTCCAGAACACAATGCTGCTCAGGTCTGGCTCGGATTTAAAAGATTAATAGCCCTCTGTCGTGACAGAAATGCAATCGTCTGAGTTTTCTGTGACAGCAGGGAGGGGGACGTGCAAAAAACGACGAGTGTGAAAACCGAAAGAGAGAAACTATTGTCCACGGTCACAAACGCAGCTGATGAGGACTGATTGCTATCGCTACTCTCTCAAGTTTGCCTGTCAATCAAAGCCGGCAACATCAATGGGACGAATTTGAATGATAAAACGAAAAGTCACAAGCGGCAGCATTTCGCTTGTCACCGGGGTTAGCGAACGTGTCGACGTGAAGAGGAGGGGAGGGGAGAAGTTTGCACAGAAATCGGGTTTTGGCGAGAAGATGCCGTCTCTGCCCTTCAATCATAACACAAAGCATTACCACCGAGCGTCTGCTTAACAATCCCCGATTCAATACCCAGCACAAGTCTGTCACTCGCACGCGCAAGAGAGAACAGAATGGGCCTGGCGCTGCAAGACACGTCGTAAGTGACACTCAATGGGAGAGTTTCATGGCTTGTCTCTGCTCCATCAGTGCGGATCAATCAAGCATTCCCCAATAACCAGCAGCTGTCACCTCGCAGGAAACATCAATCAGATGTCGTTCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_00965582_00968758.mRNA True 1838 mRNA 0.45 3 965001 969361

Neighbor

gene id symbol gene type direction distance location
CI01000071_00923006_00927912 NA coding upstream 36513 922752 ~ 928488 (+)
CI01000071_00880705_00897817 TRPV4 coding upstream 66556 880705 ~ 898445 (+)
CI01000071_00867024_00871868 NA coding upstream 91682 866841 ~ 873319 (+)
CI01000071_00825247_00853236 GIT2A, GIT2 coding upstream 111247 824939 ~ 853754 (+)
CI01000071_00807216_00807677 NA coding upstream 156859 806831 ~ 808142 (+)
CI01000071_00971517_00971823 NA coding downstream 1676 971037 ~ 972217 (+)
CI01000071_01086147_01088260 NA coding downstream 116786 1086147 ~ 1088399 (+)
CI01000071_01113148_01115596 KCTD10 coding downstream 143787 1113148 ~ 1116722 (+)
CI01000071_01139373_01146663 FOXN4 coding downstream 169703 1139064 ~ 1146678 (+)
CI01000071_01374449_01376813 NA coding downstream 404635 1373996 ~ 1377670 (+)
G280505 NA non-coding upstream 21996 941395 ~ 943005 (+)
G280479 NA non-coding upstream 60137 904632 ~ 904864 (+)
G280478 NA non-coding upstream 60988 903783 ~ 904013 (+)
G280477 NA non-coding upstream 61827 902867 ~ 903174 (+)
G280449 NA non-coding upstream 65391 898818 ~ 899610 (+)
G280537 NA non-coding downstream 41171 1010532 ~ 1010771 (+)
G280558 NA non-coding downstream 85437 1054798 ~ 1055116 (+)
G280560 NA non-coding downstream 89628 1058989 ~ 1059265 (+)
G280561 NA non-coding downstream 90320 1059681 ~ 1059906 (+)
G280563 NA non-coding downstream 96095 1065456 ~ 1065967 (+)
G280443 NA other upstream 42905 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 161684 791346 ~ 803317 (+)
CI01000071_02815324_02834097 NA other downstream 1835283 2815127 ~ 2835525 (+)
G282080 NA other downstream 2086723 3056084 ~ 3056531 (+)

Expression


Co-expression Network