CI01000071_01113148_01115596 (KCTD10)


Basic Information

Item Value
gene id CI01000071_01113148_01115596
gene name KCTD10
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1113148 ~ 1116722 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_01113148_01115596.mRNA
GAAGAGATGTCAGGAGAAAGTGTGGTGAGCTCGGCTGTGCCGGCAGCTACAACACGGACCACCTCCTTCAAAGGGTCCAGTCCCAGTTCCAAATATGTAAAGCTGAATGTCGGGGGAGCGCTGTACTACACCACCATGCAGACCCTGACCAAGCAGGACACAATGCTGAAGGCCATGTTCAGTGGCCGTATGGAGGTCCTCACAGATAGTGAAGGCTGGATTCTGATTGACAGGTGTGGGAAGCACTTTGGGACCATCCTGAACTACCTCAGGGACGGCGTCGTCCCGTTACCCGAGAGCCGGAGGGAGACGGAGGAGTTACTGGCAGAGGCAAAGTATTACCTGGTGCAGGGCCTGGTGGATGAGTGTCAGGCAGCATTACAGAACAAAGATGCATATGAACCATTCTGTAAAGTTCCACTGGTGACATCATCTAAGGAGGAACAGAGGCTCATTGCCACTGCTAATAAGCCTACAGTCAAACTGCTGTACAACAGGAGCAACAATAAATATTCATATACAAGCAACTCTGATGATAACATGTTGAAGAACATCGAGCTGTTTGACAAGCTGTCTCTGAGGTTCAACGGCCGAGTGCTCTTCATCAAGGATGTGATCGGCGATGAGATTTGTTGCTGGTCTTTTTACGGCCAGGGCAGGAAGATTGCAGAGGTGTGCTGCACCTCAATAGTCTACGCTACTGAGAAGAAGCAGACAAAGGTTGAGTTCCCAGAGGCTCGCATCTATGAAGAGACCCTCAACATCTTGCTCTATGAGTCTCAAGATGGCCGTGGACCAGACAATGCACTTCTGGAGGCCACAGGGGGTGCTGCAGGTCGTTCCCACCACATTGACGAGGACGAAGAGAGGGAGCGCATTGAAAGAGTGCGGAGGATCCATATCAAGCGGCCTGATGACCGAACTCACCACCACCAGTGACCCTGCAGTTTCTCCACTTTTCAGTGCCTTAACAACTACCAGCGCTTCAGTTACGCCCCTCTATTTGCACACGGACACGTCAGTTAAGTTTATACAGAGTCTGCTTCCTTAGAGAGAGAAAGGGATACTCTTAACAAAAGCTAGTATTGATAATGTTATATGAATATAGCATATAGGGCAGTGCAGCGTTGACCTCAAACATCAGTTGTGCATTTGAGGACCTTACTAAAAAGTTATGAGATGGTGTTAATGTGAACAAAAGTGCACAACAGATGGGTAGTTTTACTGCATTCATGACATTCCCTTAACGTTTTGCCCTAGTTGCTATTCATAAAGCAAATTCCACCAAATATATCAAGTTGATCAGCTAAACTGTCATTTAATTGTAGATTTGCATCTAATGAATATTATCAGAATTGAGCTGTCAGCCCTAGTATTTTCATCCATTTCGTCATCATTTACCATATTTTTTTCTGTTTGAGTGAAGACTGTAGGGTTCCTGGTGCCTTATAGATTAATACTGTGCTTTTTGAGTGTTTTTGTTTTGCGTGTTGTCATGGACGTTGGATTTTTGTGGAGTTTAGTTTATGCCCAATTGATTGTTTTTGTTTGCTTTGTTGCTTTGTATTGAAGTGTTGGAGCAAGATTTCACAGTGCTGAAAGTGTGTCTTACTGAGATTTGATTTTGAGTTTCAAATCAAAATTCAAATCAAAATTTTCAAAGCAAAATTCACTGGTCTTGAAAATGTGTGGATTGACAGTTACAGTGATCAGTGAATTCAGTGAAGGAGGATATTGTTGTTATTATTATTATTATTATAAGAATTCAGTCCCCTTTTTTTTTTTTACACTCGTTAGAGGAGAGTGTCATACAAATTCTTAATCTGTCAATTTTCATTTTATTATGCTTGTGCAAACGGTCACTTGCGCTTAAACAGAGGATTATCTGTGCTGGACTTTTGAGATGTCTCTGAGTTTGGCCAGTAGAGGGCAGTATAGTGTTATGGTGCTTTCACTCGTGTACATGAGGAGGCACTTTTAGATGATCAGAACAAGTAATCAGCAAGTTTTCTATGCCCTTTGAGCTACAATCAGTAAACTACTAGAGTAAACTCAGATTATGCTA

Function

symbol description
kctd10 Enables transcription corepressor activity. Acts upstream of or within circulatory system development; pectoral fin development; and regulation of macromolecule biosynthetic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including brain; fin; head; pericardial region; and pleuroperitoneal region. Orthologous to human KCTD10 (potassium channel tetramerization domain containing 10).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_01113148_01115596.mRNA True 2065 mRNA 0.43 6 1113148 1116722

Neighbor

gene id symbol gene type direction distance location
CI01000071_01086147_01088260 NA coding upstream 24749 1086147 ~ 1088399 (+)
CI01000071_00971517_00971823 NA coding upstream 140931 971037 ~ 972217 (+)
CI01000071_00965582_00968758 NA coding upstream 143787 965001 ~ 969361 (+)
CI01000071_00923006_00927912 NA coding upstream 184660 922752 ~ 928488 (+)
CI01000071_00880705_00897817 TRPV4 coding upstream 214703 880705 ~ 898445 (+)
CI01000071_01139373_01146663 FOXN4 coding downstream 22342 1139064 ~ 1146678 (+)
CI01000071_01374449_01376813 NA coding downstream 257274 1373996 ~ 1377670 (+)
CI01000071_01380924_01388813 RANBP1 coding downstream 263836 1380558 ~ 1388948 (+)
CI01000071_01392755_01411463 GOLGA3 coding downstream 276033 1392755 ~ 1412681 (+)
CI01000071_01416847_01427453 ANKLE2 coding downstream 299692 1416414 ~ 1428798 (+)
G280599 NA non-coding upstream 2685 1109227 ~ 1110463 (+)
G280546 NA non-coding upstream 23432 1089440 ~ 1089716 (+)
G280568 NA non-coding upstream 37839 1074861 ~ 1075309 (+)
G280565 NA non-coding upstream 45628 1067287 ~ 1067520 (+)
G280563 NA non-coding upstream 47181 1065456 ~ 1065967 (+)
G280614 NA non-coding downstream 90553 1207275 ~ 1207574 (+)
G280628 NA non-coding downstream 126574 1243296 ~ 1243520 (+)
G280646 NA non-coding downstream 163813 1280535 ~ 1282423 (+)
G280662 NA non-coding downstream 189176 1305898 ~ 1306142 (+)
G280676 NA non-coding downstream 240553 1357275 ~ 1370979 (+)
G280443 NA other upstream 191052 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 309831 791346 ~ 803317 (+)
CI01000071_02815324_02834097 NA other downstream 1687922 2815127 ~ 2835525 (+)
G282080 NA other downstream 1939362 3056084 ~ 3056531 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018719 kctd10,LOC105014907 coding CM030135.1 CM030135.1 19073104 ~ 19078777 (+)