CI01000071_01380924_01388813 (RANBP1)


Basic Information

Item Value
gene id CI01000071_01380924_01388813
gene name RANBP1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1380558 ~ 1388948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_01380924_01388813.mRNA
GGATAAAGAGCGACACATAACAAAACTGTGCACCAACTGTTTTGGCCAGGAAAATGTACATTTTTAATCTCACAGTTTGCTAAAGTTACACAACAGGGTCATGCTTAATTAATTATCATGCTTTAATTTCCCAAGTTAGTATTTGACCATTTTAATTTCTTCCTAAAGTGTGTATTGATTTAAAAATATCAACATAGGCACGTTTTAAGGCACTTTCCTATAAGTGAAACAAATCTTACAGTGAGCCTTAGCTGTCAACATTCTTCTGTATTATTCACACAACAGAGTCGGTTCAGTGACAGATAATTTATCCCAACTAGTTGCCACATAGCCTAATGAATCTGACAGAGATGTCAGAGCTCTGAGATGAACATGCTGAAGTCTCAGTCTTCTAGCTTACAAGGCTTTAATAAAGACTTGCTAGAAAGGCTTCTCAAAAACGCCAAAGCCAAGAAAATCAAGGCATATGTACTTGATAAACTGATAAAGAAACAAACAGCAGCAACATCATCTACTCTCATCAATTGGAGTTTAGAATTTGAGGCACAAGATGATCATGAAGCATCAACGGAAAATGTAGAGGACTCCAACCATGACCCTCATTTTGAGCCCATCGTCTCCCTACCTGAGCAGGATGTTAAGACTCTAGAAGAGGATGAGGAGGAGCTTTTCAAGATGAGGGCAAAGCTGTATCGTTTTGCCAGTGAGAACGACCCTCCTGAGTGGAAGGAGCGTGGGACGGGTGATGTCAAACTCCTGCGACACAAAGAGAAGGGTACCATCCGCCTTCTCATGAGGAGAGATCGCACCCTCAAAATCTGTGCCAACCACAACATTATGCCGTTGATGGAGCTGAAGCCCAATGCAGGCAGTGACAGGGCCTGGGTGTGGAATACACATGCTGACTTTGCAGATGAAAAACCCAAAGCAGAGCTGCTGGCTATTCGATTTCTCAATGCAGAGAATGCACAGAAGTTCAAGATGAAATTTGATGAATGCAAAGAAGAGGTCAGAAAGTCTCTAGAAGGTAGCTTGAACAGCCCTAACAAAGTGGCAGAGAAGCTCGAGGAGCTGTCTGTGAACGATGACAAGACAAAGAACTCTGAAATTGAAAAATTGGACACTTTTGTTTTTTTTCTTTTTGGCCGCTTGACTTCACAAGACCTTGGTGCCACTCTTAATGCGTCCATTTCTCAATCATCAAGATGTTGTGAGCTTTTGTCCCATTCACAAACTCTCATATCGCCCATCATTTTCTCATACATTGTGGACCAGTCGTCAGTCATCATGTATTTGTGTATTTACACGACATGCTATGATACAAGGCTTGTGCTATTGATTGATTCCCACATTGGGTAACCTCTTTTGTTGTTTTTCTTTTGTACTTTAAAGAGTTATATTGTGAGTGTCTAGATGAGCACTGTCTGATATGAGAGCGGGCTGTATGAGTTGATAGGGAGTATGAGTATCTGCGATCTTTGACTTTTCCTTACA
>TU318244
ATCATGCTTTAATTTCCCAAGTTAGTATTTGACCATTTTAATTTCTTCCTAAAGTGTGTATTGATTTAAAAATATCAACATAGGCACGTTTTAAGGCACTTTCCTATAAGTGAAACAAATCTTACAGTGAGCCTTAGCTGTCAACATTCTTCTGTATTATTCACACAACAGAGTCGGTTCAGTGACAGATAATTTATCCCAACTAGTTGCCACATAGCCTAATGAATCTGAC

Function

symbol description
ranbp1 Predicted to contribute to GTPase activator activity. Predicted to be involved in positive regulation of mitotic centrosome separation. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in centrosome and cytoplasm. Orthologous to human RANBP1 (RAN binding protein 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K15306 RANBP1; Ran-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_01380924_01388813.mRNA False 1494 mRNA 0.41 8 1380558 1388948
TU318244 True 232 lncRNA 0.34 1 1380672 1380903

Neighbor

gene id symbol gene type direction distance location
CI01000071_01374449_01376813 NA coding upstream 3703 1373996 ~ 1377670 (+)
CI01000071_01139373_01146663 FOXN4 coding upstream 233880 1139064 ~ 1146678 (+)
CI01000071_01113148_01115596 KCTD10 coding upstream 263836 1113148 ~ 1116722 (+)
CI01000071_01086147_01088260 NA coding upstream 292159 1086147 ~ 1088399 (+)
CI01000071_00971517_00971823 NA coding upstream 408341 971037 ~ 972217 (+)
CI01000071_01392755_01411463 GOLGA3 coding downstream 3807 1392755 ~ 1412681 (+)
CI01000071_01416847_01427453 ANKLE2 coding downstream 27466 1416414 ~ 1428798 (+)
CI01000071_01436960_01442221 POLI coding downstream 48012 1436960 ~ 1442520 (+)
CI01000071_01443137_01445109 BRI3BP coding downstream 54189 1443137 ~ 1445166 (+)
CI01000071_01452292_01490229 AACS coding downstream 61616 1450564 ~ 1490912 (+)
G280676 NA non-coding upstream 9579 1357275 ~ 1370979 (+)
G280662 NA non-coding upstream 74416 1305898 ~ 1306142 (+)
G280646 NA non-coding upstream 98135 1280535 ~ 1282423 (+)
G280628 NA non-coding upstream 137038 1243296 ~ 1243520 (+)
G280614 NA non-coding upstream 172984 1207275 ~ 1207574 (+)
G280695 NA non-coding downstream 77300 1466248 ~ 1517469 (+)
G280705 NA non-coding downstream 107415 1496363 ~ 1496634 (+)
CI01000071_01514470_01525572 NA non-coding downstream 133043 1514315 ~ 1528807 (+)
G280740 NA non-coding downstream 342183 1731131 ~ 1731351 (+)
G280745 NA non-coding downstream 351943 1740891 ~ 1742345 (+)
G280443 NA other upstream 458462 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 577241 791346 ~ 803317 (+)
CI01000071_02815324_02834097 NA other downstream 1415696 2815127 ~ 2835525 (+)
G282080 NA other downstream 1667136 3056084 ~ 3056531 (+)

Expression


Co-expression Network