CI01000071_01392755_01411463 (GOLGA3)


Basic Information

Item Value
gene id CI01000071_01392755_01411463
gene name GOLGA3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1392755 ~ 1412681 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_01392755_01411463.mRNA
ATGGAAAATGGAAATAATGAAACAGCCTCAATTGAGGCCATCCCTCAGCAGCCGAATGCGCAGCATTTGGACAGCAATACTTTAGAATCTCTGAAGTCGGAAAGATCACTCGTAACGGAGAAAATCCCTAATGGTCATGTCAAAGCAGAGCTGTTGCCAAACGGAGAGGCCGTGGTGCAGGGTCAGGAAGCTCACGGAGGCAGCACCCCACCTCTGGCAACTCCTTCACCGGGCAGCCGCCTTGCCGACTCCCCCCTGAGCGCAGAACTGGATCCAGGTGTGGCCTCTTTCCCTGACAGCCTAGAGAAGTCTGAGGCAGCTCTTGCAGAGGGCTCTGTTCACAAGGGTGACGCATTGCAATCGCTCAGACTAAGTATTCCTATGCAGGAGACTGAATTGTCTTCAAAAGAGCCATCAGTGGAGATGGAAAATGAAGAAAAAATTCGCCAGGAAGCTCGACGGCGTCTGGAGGAACAGCTCAAACAATACAGAGTACAGCGGCACACAGAGAGAACCAAGCGGTCCACTCCTAAGAGCCGCCAATTTAGCACTTTGGACCCAGAGCTCATGCTCCATCCTGAGGGTCTCCCAAGGGCCAGTACCGTTGCCATGACTAAGGAATACTCTTTCCTGCGCACCAGCGTTCCTCGTGGTCCCAAACTGGGAAGCCTGGGAATCCCTTCCAGCAAAGAGAAGAAATCCAAATCATCTCGGTCCAACAAGATCCACTCTCTCGCCGACTACAAAACTTCCGAATCTGACATTAAAAGCACAGAGGCGCCTGGTGGGGTAGTTTCTGCGTCTACCGACTCATCGTTTAGCTCGCTGCATTCCTCCATCAGCTCAGTCTCCACCATTTCACAAATCAGCATCAGCTCTGAGACCAACACCCATTCAGAATCATCTCAGCTTATCAGAGACAACGTCTCTGAGGTGGATGGCAGCGAATCGGGTTTCAGAGCTGATGGCAATGATAGCGATAGCTCATCCTATAGTAGTGTGTCTACTACAGGTACATTTAATATGTTAGCTGCAATAGTGAACAGGCCGAAGGCTCCATATACTGTTGAAGGGAGAGAGATTGCTGCAGAAGCCATGGGCCACTTTCCATCACTGCAGGAAGTCCTGCAGGCAGCCACTGACGAGAGACACATGGAAGAGCTGGAACAGGAAGGAGAGGGCAGCGTAGAGCCTCGCAGTCGCAGAGACAGCTTCTCCAGCAGTGTGTCATATGGGAGTTCTGTGATGGGGACTCATGATGAGATGCTGCAAGTGCTGAAAGAGAAAATGAGGTTAGAAGGACAACTGGAGTCTCTTTCCTCCGAGGCCAATCAGGCTCTGAAAGAAAAAACAGAGCTCCAGGCACAGCTGGCGACCGTAAGTGCTCAGTTGCAGGTCCAGGTGGAGCAAAGCCAGGCCAGTCAGGAGAGGCAGAGCACCCTCACCTCTGAGGTCACCACGCTACGCTCCAACTGCTCTGCACTGGAGAAGGCTATGGTGGATCTCCAGGCCAATCTGGAGGGGAAGAACGCCAGCCTGGCCTCGCTGGGCAATGACTTGCAGCTGGCTGAAGAGCAGTACCAGAGGCTGATGGTCAAAGTGGAGGAGATGCAGCAGAACCTGAATACCAGGGACCACACAGTCTCTGAGTTGCGGCAGCAGATGGGAGGCCTGCAGACACAGCTTCAGCGGGTCCAGAGTGAGAGGAACGCTCTGCAGAGCAGACTGAAGACCTCACAGGCAGAAGTGGACTCCCTGCAGCAGCTCCGCCTCTGGTACCAGCAGCAGCTGACTCTGGCACAGGAGGCACGTGTGCGACTGCAGGGAGAGATGGCAAACATGCAGGCCGGTCAAATGACTCAGATTGGTGTGATGGAAAATCTGAAGATGGAGAATGTTACTCTTTCTCACAAACTCACAGAGACGAAACATCGCTCTATAAAAGAGAAGGAACGGATTGCTGTACAGCTACAGAGTATAGAGGCGGACATGTTGACTCAAGAAGCAGCCATACATCAAATCCAGGAGGCAAAGACGATGGTGGAGGAAGATCTTCAGCAAAAGCTGGAAGAGTTTGAGGAGGAGCGAGAGCATCTTCTCAAACTTGCCAATACAGCCACAGCACTGGAGAGAGAGCTAGAGCAGGTCAAACTCATTCTCTCCCAAAAAGACGCCCAGTTGGAGTTGTTACAGCGTGAGCACCTGGAGCTGATGAAGCAGCTCACCACTACTCAGGAGACCCTCCAAACCAAAGAACAGGCCCTTAATCAGCTGGAGGCCCGTTACCAGGAGCTCCAGGCCCAGCTGGAGGAGCTACAAACTGACGCCACAGTTAAAGAGGAAACCCTGCAGTATCTCCAAAATGAGAAAATAGTCCTGGAAGTGGCTCTGCAGGCAGCACGGGCAGATAAGAGCGAGCTGGATGAAGGAGCAGAAAGGCTTGGAGAGGAAGTGCTGGTGGCCTCGGACACTCTTGACCAACTTAGACAGGAACTGCAGGTCAAAGCAACCCAGATTGAAGCTCTACAGCAAGAGAATGGCACCCTCAAAAAACAAGCACAGAAACTGAAAGAGCAGTTCATGCAGCAAAAAGTGATGGTTGAAGCTTACCGGAGAGATGCCAGCTCCAAAGACCAGTTGATTTCTGAGTTGAAGGCTTCTAAAAAGCGTCTGGTGACGGAGGTGAAGGACCTGAAGCAGGAGCTGTTAAGAATGGAGGGAGAAAAGAAGAGCGCAGAACAGGAACAGGATCGCCTGCAGAAGGAAGTGGAGAGAGTCCAGCAGCAGATGAACGGCCTGGAAGCCCATTTACAATCCGTACAGACAGAGAGAGACCAACTTGACTCTCAACTGCAGTCCCTTCAGTTTGACCAGAACCATCTGGCATCAGTGACCGAAGAGAATGAAAATCTGAGGAAGAGGATTGAACAAATGCAAAATGAAGCCAAGTCGGCTATCTCAGAGCAGAAGGTGAAGATGAAGCGTTTGGGCACAGATTTGACCAGTGCACAGAAAGAGATGAAGGCCAAGCATAAGGCCTATGAGAATGCAGTTGGCATTCTGAGCCGCAGGCTACAGGAAGCTCTCGCTGCCAAAGAGACAGCTGAGGCTGAACTTGACAAACTCAGAGCTCAAGTTTCAGAGGGAGGAAATAACCAGGAATTTCAGGCTAAGGTGAAGTCCCTGCAGGGAGAGCTGGAGACAGTAAATCAGAGTAAAGCCATGCTGGAGAAAGAGCTACAGGAGGTCATCAACCTCACCAGCACTGAGCTGGAGGAATATCAGGAGAAAGTGATGGAACTAGAAGACGAGCTCCAAGAATCACGAAATTTTAAAAAGAGAATTCGTCGCCTGGAAGATGCTAATAAGAAGCTTGCACTTGAGCTAGAGCATGAGAAAGGGAAACTCTCCGGGCTTGGAAAATCCCACAGTGCATTGCGGGAACATGCTAATATTCTAGAGGCTGCACTGGCAAAGAGAGAAGCAGATCTTGTCCAGCTCAACTTGCAGGTTCAGGCAGTATTAAAGCGTAAAGAAGAGGAGGACCAGCAGATGAGACACTTAGTGCAAACGCTGCAGGCTGCTCTGGAGAAGGAGAAAATAAAAGTCAAGGATCTGACAGAGCAGGTGGCGGAGGCCAAGCTGGAGGCAGCCCATAACCGCAGGCACTACAGGGCAGCCATGCTGGAACTCAGCGAGATCAAGAAAGATCTGCAGGCAAAAGAGGAGCTTGTCAAAGCTCTGCAGAAAGAGGCTAAGACACTTGCAGCTCAAGATGAGAAGCACTCTGAGGAGGTTTCTCATTTCCAGGAGGAATTAGCTGATGCTCACGCTCAACTCCAGATCCTTCAAAAACAACTTGATGATGAGCTCAACAAACAGCCCCTCACTAACCAAGAGGTGGAGGATCTGAAGTGGGAGGTGGAGCAGAGGCAGCGGGAAATTGAGACGCAAAAACAGCAGCTGGAGATGGTGGAACAGTGTCACCAGAGAGAGATGGACACCCTGCAGGACATGCTACAGAGGATAAAGGTGGAGCTGGAGATGGTGCAGGAGGAGCTCAACGGCACGCGGAAGGATAAATTCATGCTGCAGGCTAAAGTGGGAGAGCTGAGGAGCAGCATGAAGACTGTTCTTCAGCAGAACAACCAGCTCAAACAGGACCTCAAAAACAGCCGGCTCAGAAAGCGGATGGAATTAAAGGGGGAATCGACCCCAGTGACGCCAGTAAAAATCCCAGACTGCCCTGTTCCTGCTTCACTTTTGGACGAACTGTTGAAGCCCTCAGCATCCGTCAATAAAGAACCTCTCAATAACCTCCACAACTGTCTGAGACAGCTAAAGCAGGAGATGGACAGCCTTCAGAAGCAGATGGAGGAACACACGGTCACAGTGTCATCATTGGCCAGCGCAGAGGAGGAGCTCCAAAAACTAGGGCTTCATGAAGATATCAGCAACGATTCATCTAATAAAGAAGAGAATGATGAGATACCAGGGGAGATGCAGCCCTCATAATACACAAAGAATCCTTTAAGACACTGACGAGAGTGTTCGGTTTTAACTTCATGGGCACTTTTAAGTTTCTTTGTTTATTTCTTATCAACTGCCAACATTTGGCTTTATCCCTACCTAACCAAGATTGTTCGGGTGAAACAAAGTGTTTCTTTATACCACAGCTTTATTTTTGGGGGGTCATTTTGGTGTTCGTTTATGTTGTAGTTACTTTTATCACTATTTATTTTCAGTTTAACGAAAGAGAGCTGCTCTCTCTGTCTATCTGATCTGTTTATCTCGCTTGCAGTTTCAAAGTAGTCACCCACCTGACGTTCAGCTTTGATTTAGTTTTCTTTCTCATCTCATAAGAGGTGCAGAAAGAGGTTTGTGAGGGCTACTGCTAGGCTGCTTAGTCCTGCAGGAGTGAAAAAAAACACACACAAATGTGAATCTACAGCAGACATCCAGGGACTCCAGTGTTATAGTAACTAGTGACGTATTGACCTAATTGGTCGGGTGTATATTCTACATATCCATCTGGTGGTAGTTTTCACTTCCTGCATGGATAATTTAGCAGCTGAACTGTTCTTCCATTCCTCTGTGCCTGTGAATGAGCTGACCTCTCATTCCATCACTGGACAGATGCCTGATCTAGAGCTGTTCCCTGCAATATAATGCAAATACTATGGAAAAAAAAAAAAACAATACAAGGCCCCATATCAAGCATTTTAAAGCACAGATCAACCCAGAATGTTTTGTTTTTCCAAAAAACAGATTTTAAATCTGCATTCTTAGATTTTCCAGGCCTCAAATCAAGTCTAGAGCGATGCCAACTTAATGTCTACATGCACTCTGCACTGTGTTCTGCGTTACCCATTAGTTTAGGTCCTCTGTTTTGTAACACATTGTAACGGGACCTTGAGGATGCGCTTACAATATTATACTTCACGTCACAGCCTCTTTCTGATTCAAACTCAGGACCTGAAGCCCCAGGAATGTAAGTGTGGGACTGGGAAAAGTGACCCTTTTTGTACAGGGTATTATCTCATACATCAGGCCATCCAATATCAGCTAGTATCTGTTTTTGTCTACGGTTTGCAGATGTGAGATCCCATGCAAAAGGTCTTGATAACGGCTGTCAGAGTTCGAATAGTTCTCTTTAGGGCTGCGCCTTAAAATTGATCCAATATGGAAACCTTTAAATACTACTAAAAATGTATAGCTTGAATGAACTTATAA

Function

symbol description
golga3 Predicted to act upstream of or within spermatogenesis. Predicted to be extrinsic component of Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GOLGA3 (golgin A3).

GO:

id name namespace
GO:0007283 spermatogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_01392755_01411463.mRNA True 5733 mRNA 0.49 23 1392755 1412681

Neighbor

gene id symbol gene type direction distance location
CI01000071_01380924_01388813 RANBP1 coding upstream 3807 1380558 ~ 1388948 (+)
CI01000071_01374449_01376813 NA coding upstream 15900 1373996 ~ 1377670 (+)
CI01000071_01139373_01146663 FOXN4 coding upstream 246077 1139064 ~ 1146678 (+)
CI01000071_01113148_01115596 KCTD10 coding upstream 276033 1113148 ~ 1116722 (+)
CI01000071_01086147_01088260 NA coding upstream 304356 1086147 ~ 1088399 (+)
CI01000071_01416847_01427453 ANKLE2 coding downstream 3733 1416414 ~ 1428798 (+)
CI01000071_01436960_01442221 POLI coding downstream 24279 1436960 ~ 1442520 (+)
CI01000071_01443137_01445109 BRI3BP coding downstream 30456 1443137 ~ 1445166 (+)
CI01000071_01452292_01490229 AACS coding downstream 37883 1450564 ~ 1490912 (+)
CI01000071_01514470_01525572 NA coding downstream 101634 1514315 ~ 1528807 (+)
G280676 NA non-coding upstream 21776 1357275 ~ 1370979 (+)
G280662 NA non-coding upstream 86613 1305898 ~ 1306142 (+)
G280646 NA non-coding upstream 110332 1280535 ~ 1282423 (+)
G280628 NA non-coding upstream 149235 1243296 ~ 1243520 (+)
G280695 NA non-coding downstream 53567 1466248 ~ 1517469 (+)
G280705 NA non-coding downstream 83682 1496363 ~ 1496634 (+)
G280740 NA non-coding downstream 318450 1731131 ~ 1731351 (+)
G280745 NA non-coding downstream 328210 1740891 ~ 1742345 (+)
G280443 NA other upstream 470659 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 589438 791346 ~ 803317 (+)
CI01000071_02815324_02834097 NA other downstream 1391963 2815127 ~ 2835525 (+)
G282080 NA other downstream 1643403 3056084 ~ 3056531 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030947 golga3 coding NC_007116.7 CM002889.2 18965494 ~ 19006290 (-)
bowfin (Amia calva) AMCG00018643 NA coding CM030135.1 CM030135.1 16394956 ~ 16409595 (-)