CI01000071_01514470_01525572


Basic Information

Item Value
gene id CI01000071_01514470_01525572
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1514315 ~ 1528807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_01514470_01525572.mRNA
GTTTATATTCAGGAGTAAATAAACATGTATAGAACAAACAGATATAGATCTGCATGATGAGCCTGAATTGATTTATACACACAGATAAACAAGCCTGCGGGTGAATAAGAGGCACGTAAATAACTAAAACAGCGAATTGCCGATTTGATTGCAAGATGGCCCAGTCAGATTGGATGTATTCTAAATCACTGTATTTACATAATTCAATCTCACTTTACAGAGCTCTGCTAATCAGCATGTGTCACGCTGGAACTGCCACGGGACAGAAGGTGGGACGCTTTCTCTGGGGTAATCTACTGGCAACGCTGGAGTACCAGCTTGACTGTTGGCCTTTCTGTCTCAGGAGAACTACGCGAACTATTCATAATGTCGTTTTTGAACAATATACTACAACTCAGAAAGCCAAAGATGATCGCTGTACGGATGGCGTTACTGCACGCGCTCCTCGTCTCGTCTCTCCACGGAGCATCCCCTCCCTTCGGCGTTTGAGGGCAGATATCTGTGTGTTTCAGGGCTCAACCGCGGGTCTGAACAGTTGTAACAAAACCAGAGAGGTGGAGAGAAAGAAGTTTGCTAAGACCGAAATGATTTTCCATTACAACTGCAGAAAGACCAGTTAGCGAGTTCCCATTTTGCAAACGTA
>TU318274
CACGCGCTTCCCGCTCTCAGCGCTGGAGTACCAGCTTGACTGTTGGCCTTTCTGTCTCAGGAGAACTACGCGAGTAAGTTCATTTAGGCAAAGCGAAGATAAAAATCAAACATGTCAACGCAAAAGCAGCGTCATAGGAGCGATGGGAACATTTCAGAGAGAGTCAGCGGCGACCGCCGTTGGTTTTGCGTTCCCGTGCGCCAAGAGACGGATTCATAGGACGCGCGTCTACCCACCGTTCTCGCGCGGAGAACACCACCAACTTCTGCGGCGCGTGACTTCATAACGCCACCGGTCCGGACCTTTATACTTGTGTTTTAAACTTTATGTATTGAAGGAATAATAACACCAGAGGAACAATGACAGTGACTTTCCCGGGCTTATAATAACGCTTTACCACTTTAGTAAAGGGTTTGATTCTCTTTTCCAACGGAATTTTGGTGATAGTTAAAAGGACACGGATTTTTTTGAGGACCGCAACAACGCGAATCTGCTGCCGAACCAGTTATATTATCACATGACTTTCCACAGGATTATGTTATTTATTCAACAACTTCTCAAACTAGACTATTCATAATGTCGTTTTTGAACAATATACTACAACTCAGAAAGCCAAAGATGATCGCTGTACGGATGGCGTTACTGCACGCGCTCCTCGTCTCGTCTCTCCACGGAGAAGCAAGAGACAGTGATGAAATGAGCAGACTTGTGTCCCGGCAGCATGCTGTTTTTATTCATCCCCTCCAGCTGAGGACCCACAGTGGCCTTCACATCTATTTTTACTTATACTATCCCAGCAAGTCTGAAACTGGACATGTCATACAAACAAACAATTAGGCTGTGGGGGTGAGATAGAGACAGACAGAAAGTGTGGGGGATTGCAAAATTAGAAAGTATGTGTTGAAGATCTTCCAACGTGAGGGATGACAAGTTTGTCCAAGTGTGTGAGGGCTTGGATGGTATCAGAGATGTTGACTCTGGAGACAGCACTTGCTGATCAAGCATTGAAGCTGTCATCATCATCATTACTGTGTTTTTTTTTTTTTTTTTTTTTTCTTTTCCCCAGCCTCCGCAGCAAACGTGGCCTCACACTGCTGTGTGTAATGGACTGCATTGCAAAGAGTACATCACTTGCAAGTTGAGACAGCATGTGGTTTAAATGCATGGAATTGTATCCGGTGAACTGTGCAATATCCACAGGAATATTTGCAGATTTGTGTTTGTAGAAAACTGCGCAGTGTTTGCAAGTTAGTGTCTGGTTGTTTGATTTATTTGTTTTTTCTTTTAGACTACAGAATTGCTGACATATAGTAGGATGGACAGTTTGAATTGCACAGCATATGAGAAATGGAAGCAAGAGGTGGAAAACAACTTATAATGTGCATGTGTCTGTGTGATGGTGGGGTCTGAGCCAGTGTTTGATGACTGAGGAGACAGATCTGTGAGTGAGTTACACCAAATTTGCAATTTGTCTTCAATTGAAGGCCTGAAAACGCACCTGTTCTCAACGACGCCATCGATAAATCTGGGGTATGAAAGGTTTTTGTTGCTTCAGGGAGTTTTAGGAGCTTAATTGACAAAAGCAGATGGATGTTTACAGAAGGACCGTCTTCCAAGTAAGGCTTAGAGCTAATTTTCCTAGCTGTGCGAAAACTGACTGTGAAACATCTCTCATCTTCAGCATCCCCTCCCTTCGGCGTTTGAGGGCAGATATCTGTGTGTTTCAGGGCTCAACCGCGGGTCTGAACAGTTGTAACAAAACCAGAGGTGTGATTAAAACTGTCAGACTATCAGGCTGTCAAAAACAGTGTACACACACACACACACACACACACACACACACACACTACATGCGTAGACACACACTGGCTGTGCCTGTGAGCCAGGCCGAGCAAGGGGCCCATATGTTTGAGGGTTGGCTGACACCAGGGAGATGATTTGCTCTAGGGAGACTGTGAAGCCTAAATCTCTTTCGCTTGCTCTCTCTCTACTCGCTCACACAAACACACACAGCCATGCAGGCATTCAGGCATGCTTATGCGCACAGACACAAACCCTCTTGGTGGGTTTTCTTGCTGACAAACTTTCTAGCAAAGCAATAAATGGTGCATTTTTGCTTTGTTTCTTAAATTCGTCATATTAAATTCAAGACAGTGAGATTCACAGCTAGAAGTGTGAGAGCAGTGAGTATGTGCTTTTAATAATCTATATCCAAAGAGGGGTAATCAAGAAGATATTTCCCCACAGATTGGCATCCAGAGAGAAAAGAGGGATAGTGGACAGGAGGGGGGCAGATGAGTGAAAGTAATGACTGTGATCATTATCTTCCATGTTTTTAATTGAGATAATGACCCAGAGGAAGACAATAAAACTCCCAAATGAAAGATTCCCCCCCCCTGTCATTCTGTCATTTCTTCCCTTTATTTTTCTCCTTTCAATTTCCTAGAGGTGACTGCATGAAATTTCATCAGTTTTGATAGCCCCCCTTCCAAGATGGCTCTATAACCCCGAACAAAGGAGCGTTGTTATTCAGGAGTCTGAAGGCAAATGTTTCCTTAGAAATCCTCTGTTGTGTTCTCATATGAAATACTTAAATGCGATTCTGTCACTTCTAACCCTCAGAGGTGGAGAGAAAGAAGTTTGCTAAGACCGAAATGATTTTCCATTACAACTGCAGAAAGACCAGTTAGCGAGTTCCCATTTTGCAAACGTAATAAAATTGAAAACTTTCATCTCAGCAAATTGATTTCAGTCGGATTCAGAAAGGAAGAATGAAGAGGAGGGGGAAAAAAAAATCATTAGATCATTGAAGCATGGCTGTACCGTGGGACTTTTGGAATTTGCGTATAGAGGTGTGAACACACACACAAAACTGCTTTACTTTTGTTAATTCATTCATTCATTCATTCTGTGACTTTGTGAAGGAGATTTTTGCATTCGAGAAGGGCATTTGGGTAAATACAAAGGCAGACTGAAGAAAAAAAGCACAAATTGGCAGCAAAAGCAATGACTTGATAGATTGATAAAAAGAAGGAATGAATACCTTAGAAATCCCTGAATTATCTCTGAATTTAAATCATTACTCAAAACTCACCTGTTTTCTGGATGTTATACCTCTGATTTGATGAATTGATTGCTCTGCATTATTACTAATATTTCTCTGAATGTTATGTTATGTCTCTTAAGTCCTGTTTTGTATTTCTGTATTTGACTCTATTCTTCTGTATGCTTCCCTGTCCATTATTGTTTTCATCATTGTCTACTTGTATTATCTCTTCCTTGATAATTGTAAAGCGTCCTTGAGCCCTGGAAAGGCGCTATATAAATAAAACTTATTATTATTAATACATAGATATTTGTGACTCAAGAATATATGCATATCTCTTTTTTTTTTTTTGTTGCTTTGTAGAGAAATAGTTTTTTTCCCCCCATCTTGCTATCTATTTGCAGGCTGCTGGAAGGTATTTCTCTGTCATTAACGACTCTCGGCCGGCAGTTCATTTAACACGTACATGCCCTCAGAACGCCTGAGAAATTATTGGCATTATCATCAGCTAGACTCCACATATTCTCGCGCTCTCTTTAGGATGTATTGTAGCCATATGGTATTGGCTCTGGAAATTAGAGTTGCACTTTTGTGTTACTAGTTGGCTATCATTCTCTTTTTCTTTCTCACTATGGCAATTTTCTCTATCGATTGGACTGGGTTTTCTTTCCTGTGATGATGTGAGAAAGGAAGAGCGAAGGAGGAGAAAAAAGAGGATACTAGAGGTGTTAGAGGTGGCTCTTGTTTGTGTAGATGGAATAATTAACACTCATTAAGAGGGTGATGAGAGGCTTAGGGGTGATGCTACTTGTTAGGATAATTAGAGTCAAATAGGTCTCATTATGCAAATTTGGAGGAAGTGTGATTCTGTCAGTGTTTACCTGAACTCTGTCGTACCAATGACCTCAGATGGAGATGACAGTGTTGAGTGAAGCAGAGTATCTAAATAAAAGGAGGGATAATGAGCTGTTATACGGAGAGAATAAATGGAAATAAAATAAAGGATGATCTATTTAAGAGATGTGAAAGAGAAAAACGAGTAATGAGATGACAGAAACGAGGGAGGATGGATGAAATCTGTAATCTGTAATCAAATATAAGCTCCGAGGGCAATAAAGAAGCTGCTCCATTTTCAAGGAAATGAAATGTTTCTCAAATTATTTTACCGTAGAGAGATCTGTGGATAAGCCTTTTAGGGCAACTCCGCTGCAGAGAGAAAAACAACTCTCTTTAATAGGATAGGTGAAAATATTCAAACAAAATACAATGTCCTCCAAGCAGCAGTGCCAAAGCTAACACCATGACGTTATTGTGATGTGGAGAAGACCACTCAATGTGTCAGTATTCTCACTGTTCCTCTAGAGAGCACTTGTGTGGTCTGCAAAGCATTTTAAAGCTCTAGAAGCTGGACTCTGAAATATGTTGCAGGTATGGGATTTTATGTATTTATGATGAGGCTTGTGTGTCTCTATAGTTGTCCGTAAGGCACCGACCTCTACTGTGGTTGAGGTGTGAGTGTGTGTGTGATGGATCGAGGCTCTCGTTAACCGCAGGGCTCAGTGGGTGATTACTTCTCAACATGTTGCCTGTCCTGCAGAGTTTTGGCACCATGATACACACGCGCGCACACACACATAGATGAGACCTAAATGACTTTGCTCAGAGTTGGGTGGAGCGCTCACAGCTCTGTGAGTGTATATGTGAACAGCTCATCTTGGCACCAGATCACTCCATCACTTTGCCTGGCATAAGTTCTGTCAGATGGTCTGTCTGCTTGGCGTGACCTTACTGCGCTCTGTACGCCTGCGATGCAGTAATAGATAAATAATGCTTCTGTTCAAAACATAAAAGCTTCCTTGGTGAACAACTTAAAATAGAAAAAAACAAATTAACATTCCGCATGGTGCAAGACTACGTTTTGAATGTTTTGCGCTGTCTTGTAAGCAATTTCCGTTTCTCTCTGTTGGTGGCCAGATGAACGACCGGCTGTATGTTTTGTTCTGTTAAATAGTTTTGATTGAAAAAAAAAAAAGAATTTTATTCTGTCAATTAGTATAACAAGAAATGGATGAAGTCATATCAGCTTTTATCTATGAAAATACACAACCATATAGATAGTAGCTGTCAGTAGTTGACAGGGTCAACATTTCAGATTTTGTTTGCCTTGTTGACATTTTCACTACCCTATCCACAAAGAAATGAGTTATTTATAAAATATTTGTTTTATTGGCATGTTTTTATATTTGCTATAGGCATATATATTTTTCGTGAAATCAAGTTTATTTTTGTAAACTAAAATTATTTTTATCTTGATTTTTATACCTAATCGGCATGAAATGAAAATATCTATTATCTATTTTGTAATAGATAATATCTATTATCTTTTAGTGAATGATTTTTCCATGTATGTTTAATTCTTTTTTTTGACCTCGTAATGTTTAATCAAAATCTCACAACTCGGTCTCATTACTCATTACTCTCATTACTCTCTGGTGACATATGTTGGGTTTCTCCAATCGTGTAGTCCACTTAAACCCTGTCCCTTCATAATCGACTCAAGCTCGCATTCATTTGAGCTCAATGCACACATCTCAAAATCCAATCAACAACCAATGCATAGAACCAATTCCCTGCGCTTGAGTTTTTTGAAAATCGTGTTACTCAGGGTTGTATGTCACAATGAAAAAAAAAAAGTCTTTGTAACTTTAATGTATAATTTTCAGTGGGCAAATGACTGAACTCTATCAGCTGAAGCAAAACTGTCACAGAGCGTGGACCATGGTTTTTGTTGAGCCAAAGTGTTGCAGAAAAACCCCCAAATTGAACTAGTGCATTATAAATATGCCACAAAGTTTTGTAGCAAGACACGCTCTTCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_01514470_01525572.mRNA False 643 mRNA 0.44 6 1514315 1525595
TU318274 True 5925 lncRNA 0.40 3 1521991 1528807

Neighbor

gene id symbol gene type direction distance location
CI01000071_01452292_01490229 AACS coding upstream 23403 1450564 ~ 1490912 (+)
CI01000071_01443137_01445109 BRI3BP coding upstream 69149 1443137 ~ 1445166 (+)
CI01000071_01436960_01442221 POLI coding upstream 71795 1436960 ~ 1442520 (+)
CI01000071_01416847_01427453 ANKLE2 coding upstream 85517 1416414 ~ 1428798 (+)
CI01000071_01392755_01411463 GOLGA3 coding upstream 101634 1392755 ~ 1412681 (+)
CI01000071_01580310_01581199 NA coding downstream 54715 1580310 ~ 1581205 (+)
CI01000071_01677282_01720849 NA coding downstream 151687 1677282 ~ 1720849 (+)
CI01000071_01909999_01929819 NA coding downstream 383483 1909078 ~ 1930261 (+)
CI01000071_01966426_01969786 NA coding downstream 440498 1966093 ~ 1969786 (+)
CI01000071_02000540_02048898 NA coding downstream 474790 1993072 ~ 2049583 (+)
G280705 NA non-coding upstream 17681 1496363 ~ 1496634 (+)
CI01000071_01380924_01388813 RANBP1 non-coding upstream 133412 1380558 ~ 1388948 (+)
G280676 NA non-coding upstream 143336 1357275 ~ 1370979 (+)
G280662 NA non-coding upstream 208173 1305898 ~ 1306142 (+)
G280646 NA non-coding upstream 231892 1280535 ~ 1282423 (+)
G280740 NA non-coding downstream 205536 1731131 ~ 1731351 (+)
G280745 NA non-coding downstream 215296 1740891 ~ 1742345 (+)
G280772 NA non-coding downstream 259021 1784616 ~ 1784816 (+)
G280781 NA non-coding downstream 282481 1808076 ~ 1808304 (+)
G280783 NA non-coding downstream 286028 1811623 ~ 1812051 (+)
CI01000071_01374449_01376813 NA other upstream 136645 1373996 ~ 1377670 (+)
G280443 NA other upstream 592219 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 710998 791346 ~ 803317 (+)
CI01000071_02815324_02834097 NA other downstream 1279049 2815127 ~ 2835525 (+)
G282080 NA other downstream 1530489 3056084 ~ 3056531 (+)
G280695 NA non-coding upstream 4522 1466248 ~ 1517469 (+)

Expression


Co-expression Network