XLOC_010575 (si:dkey-260g12.1)


Basic Information

Item Value
gene id XLOC_010575
gene name si:dkey-260g12.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17102103 ~ 17116499 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020721
gtatggGGAGAACACTCCAGGTTTCTACAATGAGTAAGTGGGTATTTCACAAAAATGTACTAGTTGTTTGTTGCTATATGACCTAAAAATATGTTCAGAATCAATAATCACAAATCTATTCTTGTATGAAAATTGCAAGAGAGTCAGACAAATCTCCTAGAAATATGttcaaaatcaataataaattgcAATAAAGAGAATTTCAATtgtaaacagacaaattgctcattgctcattttaaatagaagAAGTGTATTTTATTTGCAGCTTCACACAAACATGAGTTCAtctatgtatattttatataaaacatttcaaaactgCTCCAATTAGACTCACAGTTTGCATCTTCTTAGCCTTATTCAAACCAGTAATAATGACACatcaattattattatagaaTGTAAAGctataatctctctctctctctctctctccaaaagCAGGTGAAGGGCAGCATAAGAAAGAGAGGGAGGAGAATGACAGTAAGACATCAGGTGAGGAAACAATGATATGAGATGAGCAGTAAAGAACACAGCCTGGCAGAAGACACTGAAATTGAGTTTGAAAGCGGAGATTTTGGATTTGAACTACTGTTAAGatgCGTACGACTGTGTTATCTGTAGCCTTGGTGATGCTGACAGGTCATCTGATATATGGCCTCCCTATGCATAACGGAAAGGTGAGAAACGGCAGAGAAGCATCAAACAATTGCAGCGATAGTTGTCCAGCAGgattTTACAAAGATGATTGCAAATGTCATCAGTGCAACCATGATTTCTTCAATAATAGGGAAAATGAAGACAGTTGCACCCGCTGCTTTCAGAGATGCACACATGaattcAAAATGGAGAAGGTCAAGGAGTGCACAACCACGTCAGATGTAGAGTGTCGCTGTCAACGTGGATATACATGTGCCTCAAAAGATCAATACACAGGCCAGTGTGAAAGCTGTGTTCCCAACATCACCCCAGACCCCACACCATTACCCCAGTCCTACACCTCCACTGACATAAGTTCCAAGGTCCCTTCATCCACTCTTTCATTCAATGGCTTTACTGACAGTCCAATGGATTACAAAGATTACTTGTtatggactttatttggactcaTTTCCTCAATTCTATCCATCATCATCCTCACGCTGATCCTCCGGTTCTGCAGTAAGAAAGAGAAGGAATGTTTAAAGCACATTGTCAGGCAGTGCTCATTGGGAGCAGATGTGGACAGTGAGGTCACGCCTCCCAGCCAACCAGATGAGCAACCTCATACCCATGAAATGTTGTCAGATGTCTGCTCACCAACCAATCACAACACAGACCCTTTTCATCAGCCAGTGAGCCAAGAGCAAGCTGTTCCTCCAGCTGGTAATTTAGGTCCTCTTCACATCTACGGCCCCCAGACAGTCTTTGTTAGCTTGCTCAATCATTTTGCAGGAGAGCAAAAAGCACACGAACAGGGCGAATCTCTAAACAGCAGTAGCATGTCCTACCCTCAGTCTCCCCCCGTCCATCTCTCAGAAGAAGAAAGAAGCGGAGAGGACGATTTCATCTTCTTTCCATCTCAGGAGCAAGGAAAAGAGTGCCAcatttccaaagaagaggtgctATGAGGAATCACAGGAGACTTCCCGTTTCTGTTCTTTTTCCGTACTGTTCTGCTGCTGTGAGCTTTGTTCTACCTGCTGCCTCATGAGTGTTCAGTATTAAAACTCTAAGCTTGGCAGGGGATTTCATTGAGAGCAACAGAGAAAGATCTGGCCATCTGACTAGTAGTATGGATGACAAAATTGATGCGCAAGAGCTTGACAGTTTATGCTAGCTTTGAAATATCAGTTTGTACTGTCTGTTTATCTATGCTGAAGTTTGTTTGAAGAGTCGAGTGCACAGGCTTTCAGGTCTTAGGTTGGATAAGTCtcaggaagaaaagaaaaagtggaatctttttttctttttgcttgttttaagtgtTTGAAGGCAATAAGCAGCTCTAAGACACTCAAAAATTCTCatatatgataaaatatttattttagttgaagCATCATGCTTGATTTCTAAAGAGacttaatatgtttttaattatgaAGCTGGTTGTGTCTTGACagttatgatttttatttatttatagctgtTAAACATTGGATTACAATTGTGCGAAACAGTTTTTTATGCTTGCACAAGTCCATGGCTGATGTTGTCATTGTACTTCCTCTTTTCTTAAATTATGTGGCAGATATGAttgatcatcaaaaaaaaaaaaaagaaaaatccctGACATTTTGATGGTGGTCTGAAAATGTCAACATTGTTTCTTCTTTCAGAACTCAATAATCATGGCGCACACAGTTTATCTTGTGTTATGTTTGTATTTGCTGTAACACATTTTTATAACCGTTATTAAATGTAAAGTGCAATATGatgaataaagttttatttttggtaTA

Function

symbol description
si:dkey-260g12.1 Predicted to be involved in TRAIL-activated apoptotic signaling pathway and positive regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane.

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0036462 TRAIL-activated apoptotic signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-284 Predicted to be involved in TRAIL-activated apoptotic signaling pathway and positive regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane.

Ensembl:

ensembl_id ENSDARG00000094366

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020721 True 2446 mRNA 0.39 9 17102103 17116499

Neighbor

gene id symbol gene type direction distance location
XLOC_010574 tnfrsf1a coding downstream 29542 17060758 ~ 17072561 (-)
XLOC_010573 plekhg6 coding downstream 45473 17007089 ~ 17056630 (-)
XLOC_010572 uts2r3 coding downstream 340939 16757219 ~ 16761164 (-)
XLOC_010571 c4b coding downstream 400385 16665203 ~ 16701718 (-)
XLOC_010570 tnxba coding downstream 452339 16621242 ~ 16649764 (-)
XLOC_010576 CU861451.1 coding upstream 3565 17120064 ~ 17120186 (-)
XLOC_010577 iffo1b coding upstream 5487 17121986 ~ 17162843 (-)
XLOC_010578 opn9 coding upstream 46694 17163193 ~ 17188294 (-)
XLOC_010579 gapdh coding upstream 73340 17189839 ~ 17200120 (-)
XLOC_010580 wu:fj39g12 coding upstream 87752 17204251 ~ 17207754 (-)
XLOC_010626 CR392024.2 misc upstream 3778613 20895112 ~ 20895175 (-)
XLOC_010568 NA non-coding downstream 498023 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 528573 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 non-coding downstream 572131 16526975 ~ 16529972 (-)
XLOC_010562 NA non-coding downstream 831668 16266556 ~ 16270435 (-)
XLOC_010554 CT573799.2 non-coding downstream 1287602 15813506 ~ 15814501 (-)
XLOC_010582 CR936322.1 non-coding upstream 128409 17244908 ~ 17245047 (-)
XLOC_010583 CR936322.2 non-coding upstream 130723 17247222 ~ 17247363 (-)
XLOC_010592 NA non-coding upstream 588331 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 706948 17823447 ~ 17824848 (-)

Expression


Co-expression Network