CI01000071_03062277_03064334 (XBP1)


Basic Information

Item Value
gene id CI01000071_03062277_03064334
gene name XBP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 3061838 ~ 3064706 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000071_03062277_03064334.mRNA
TTATAAAAAATAACAAACATGGCTTTAGCCCACATTTACATCACATTTTTGTTGAATTTATTTAGTTAGGTCGAAATTAATAAGGTAATATTCTTTACATAATTTTATTTTTCTTCAAGTCTAGAATTTCTATTTTTAAAATCCATATGAAAAATAATGTATAATAAAGTATGAATGTCCACGACGTAAACATGAAACTTACATCAGCTAATTTAACCCAAGCAAAGACTGACGTCCAAATACGTCAGTGGTCCCGGCAGCCAATCGCAGCGCACCACGACGGTAGAAAAAGAACGCGAGCGTTTCCACTTCTTCAATTTTCAGAGATCGAAGGGGAAGTGAATACGGGGAATTAAGACGATTTTAAGGACAGTTTCCCACCCCTTAACAATACAGTCAGGGGTCTTTGCACGGATCCTAATCCACAAAACTACACAACATGGTCGTAGTTACAGCTGGGACCGGAGGAGCCCACAAAGTCCTTCTAATATCGGGAAAACAGAGCGCTTCGTCCGTGGCGACACAGGGCGGATACAGCCGTTCAATATCTGTCATGATACCGAACCAAGCCTCTTCAGACTCCGACTCCACCATCTCTGGACAACCACTGCGCAAAAGGCAGAGACTCACGCATCTGAGCCCAGAGGAAAAAGCACTTCGAAGGAAACTGAAGAACAGAGTTGCTGCACAGACAGCAAGAGACAGAAAAAAGGCCAAAATGGGGGAGTTGGAGCAGCAAGTTTTGGAGTTGGAGCTTGAGAATCAGAAACTTCATGTCGAGAACAGGCTGTTGCTAGAGAAGACGAGCGAACTGATCAGTGAGAATGAGGAGTTGAGACAGAGACTGGGGTTGGATACCTTGGAGGAAAAAGAGAAGGTTCAGGTACTGGAGTCCGCAGTGAGCGATTTGGGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGCCTCCGCAGCAGTCTGATCTCTTACTTGGTATTCTGGACATCCTTGACCCAGAACTCTTCCTCAAAACAGAACTCCAAGAAGCACATGAAGCCCACCAAGAGCTTGAGCTGGTTGGGGGTGCCGGAGAGCAAGTACCTTCCTCCCCACCTGCAGCTTTGGGGCCCGCACCAGTTAAGCTGGAGGCCCTTAATGAACTGATCCACTTTGACCACATCTACACCAAACCCGCCGAGGTGGTGAGCGAGGAGAGCATTTGCAATGTCAAAAGCGAGGATTCCGTTGCCTTCTGTGAGGTCGATGAAGAAATCGAGGTGGAAGTCCAAACTGTGTCCGTTAAAGACGAACCAGAGGAAGTGGTCATCCCTGTGACGGATCAGAATCCAGACGTGGTTGATGACTTCCTCTCCGACGCCTCTTCCTTCAGCGACTACGAGAAGGTTTCGTGTCTGACGGATGCGTACAGTGACTCTGGATGTGAGAGATCTCCCTCCCCCTTCAGCAACATTTCATCCCCACTCTGCTCTGAGGGCTCTTGGGATGACATGTTTGCCACTGAACTCTTTCCCCAACTGATTAGTGTCTGAAAGTTGCATACAATATCCAATATGCCTGCCTTTGCTCTTTTATTGTAAGTGATTGCCATGTGCTTCATAGTTATAGTATGACCGTAGCATATAACCCCTCTTGCAATTTAGACCAAAGGCATTGCTTTAAGGCTTCTGTTGTAATATTGCAGGTCTATTTGTGTGCAAGACTTGCGGTGACTCTATGTACAGTTCAAACGCAACTCAGTATTTTTGTTGGGGAAGGGGATGGGGGGGGGGGCTAATCCTTTTAAAAGTAGACCTATTTATTTGTGTATCTCTCTTTTCTAGAGTTTTCTGTATGTAATCTCTCGAATGCTTGATGTACAACCTAATTTTATTGTAAATGCTCTCCTCAATCATATTGCATTA

Function

symbol description
xbp1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within gland development; hatching; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial mesoderm; axis; digestive system; ectoderm; and germ ring. Orthologous to human XBP1 (X-box binding protein 1).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09027 XBP1; X box-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000071_03062277_03064334.mRNA True 1915 mRNA 0.46 5 3061838 3064706

Neighbor

gene id symbol gene type direction distance location
CI01000071_03016024_03022596 NA coding upstream 38844 3014670 ~ 3022994 (+)
CI01000071_02960341_02966088 COQ5 coding upstream 95392 2960037 ~ 2966446 (+)
CI01000071_02927971_02953988 NA coding upstream 107671 2926649 ~ 2954167 (+)
CI01000071_02838185_02847470 NA coding upstream 214227 2838148 ~ 2847611 (+)
CI01000071_02815324_02834097 NA coding upstream 227139 2815127 ~ 2835525 (+)
CI01000071_03108610_03108994 NA coding downstream 43738 3108444 ~ 3108994 (+)
CI01000071_03329447_03356262 TAOK3A, TAOK3 coding downstream 264741 3329447 ~ 3357152 (+)
CI01000071_03361493_03387786 NA coding downstream 296787 3361493 ~ 3390180 (+)
CI01000071_03414821_03439810 GNB1L coding downstream 350115 3414821 ~ 3439810 (+)
CI01000071_03756518_03756925 NA coding downstream 690050 3754756 ~ 3757404 (+)
G282082 NA non-coding upstream 3319 3058314 ~ 3058519 (+)
G282076 NA non-coding upstream 9366 3051781 ~ 3052472 (+)
G282075 NA non-coding upstream 10314 3051120 ~ 3051524 (+)
G282014 NA non-coding upstream 261057 2800542 ~ 2800781 (+)
G282089 NA non-coding downstream 3899 3068605 ~ 3068899 (+)
G282093 NA non-coding downstream 7314 3072020 ~ 3072255 (+)
G282108 NA non-coding downstream 52804 3117510 ~ 3117800 (+)
G282127 NA non-coding downstream 92136 3156842 ~ 3172793 (+)
G282145 NA non-coding downstream 133744 3198450 ~ 3198700 (+)
G282080 NA other upstream 5307 3056084 ~ 3056531 (+)
CI01000071_01374449_01376813 NA other upstream 1684168 1373996 ~ 1377670 (+)
G280443 NA other upstream 2139742 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 2258521 791346 ~ 803317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G43315 NA non-coding NC_048565.1 CM023219.2 40176641 ~ 40176932 (+)
rainbow trout (Oncorhynchus mykiss) G1017618 xbp1 non-coding NC_048575.1 CM023229.2 75400009 ~ 75403058 (+)
bowfin (Amia calva) AMCG00018654 NA coding CM030135.1 CM030135.1 17253155 ~ 17256857 (+)
tiger barb (Puntius tetrazona) G33018 xbp1 non-coding NC_056703.1 CM032072.1 3659867 ~ 3662929 (+)