XLOC_010577 (iffo1b)


Basic Information

Item Value
gene id XLOC_010577
gene name iffo1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17121986 ~ 17162843 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020723
GCAGAGACTGGAGCATTCAAGTGTATTCAGTTTTCCAGGCAAGGAAGCTACAAGGTATTAGTTTGGACCTGCTTAAATTTAAACGTATTTCGTTGGCGTTTTTGCAATAGTTTGCTTATTTGAATAGGCATTTGCATATTTCTGCGCTTTTATCGGTTCCTGCAGTAAGAGTCGCTTCTTCATCAACGCTTCTTCATTCTTACTCAGCATTCACGCGCAAGCTGTAATAGTCTTAACTCGTTGCATAAGGCTTTAACGAGTTAAACGTGGATATTGCCGTGTCATCGGGTCGCTAAACACTACTGACCTTTAAAATCAAGCCGTTAATTGTTTTGAAAGTCAGACATAGCTGGTGTTCATGCCCGATCTGCAGCGCTTCAGTTTTCCGTACCGTAGCATGAATTCTcctctccatcatcatcatcatcatcatcagcagcagcagcaccaaCAGCATCAGCACCCAGAAGGACCCGGTCATCCCGATTCTCCCTCCAGTTTACTCCCCGAGGCAGCGATCTTCGGAGCTCCCGATCCGTCCTCCTTTTTTCTCGGAGAACAACCCGTCCCTGCTGGTGTCACCCAATCCGCACTTGACCTTACTGCATCTTCCTACCTGCACTTTAGTCCATCCCTTCACTGGTCCCAACCTCCTCCACCTACAGCCATGGCATTAAGAAACGATCTGGGATCCAATATCAGCGTCCTAAAGACTCTCAATCTGCGGTTCCGTTGCTTTCTGGCTAAAGTGCATGAACTGGAGAGACGCAATAAAATATTGGAGTTACAGCTGCAGCAGGCTTTAGACAGCAATAACAAGGGTGGATGCACGGAGGATGGAAAGACCAAAGAAATTGGTGTGCAGACTGGCTTTATTGGGCCCATTGCTGTCCGGCCTGGGTCTTTATCCTTTCAAAACACTAACAACTCTGCCAAACGACCCACTACATTGTTTATGCCTTCTCTTACAACTGTCCTCAAGCTTGAACCTAATAAACCTGGGGATGAGACCACATCAGACCCGAATATTAATagaaacccaactatcacagtcaGTCTCTCAACCCCCACTACTGAGCCTGCTTCGGCCAACACAAACAACTCCAATAATACTCCACATGTAAGCAGTGTTGGAACCGGGACATCTCCAAACCCTCCTCCTCGCTTCCTCCCGGGCACTATCTGGTCCTACAACCACACACGGAAACTGGGAAGCGGAACAGAGACTCGGGTCACCAGTCCTGGAGTTTCGTGGGTCCACCCAGACGGAGTGGGTGTACAGATAGACACCATCACCCCAGAGATTAGAGCACTTTACAACGTCCTGGCCAAAATCAAAAGAGAGAGGGATGAGTACAAGAGAAGGTGGGAAGAGGAATACACTATGAGAATGGACATGGAACAAAGAATGAATGATCTGCAGGAGGACCTACAGGAGAGTGAAGTATGTCAGGATGAATTGGCCCTCAAGGTCCAACAGCTGAAAGCTGAACTTGTGCTCTTTAAAGGACTCATGAGCAATAACCTGTCGGAGCTGGACAGTAAAATCCAAGAGAAGGCCATGAAAGTGGACATGGACATCTGCAGACGCATTGACATCACAGCTCGTCTGTGTGATGTCGCCCAACAAAGAAACTGCGAAGATCCTATCAAGATCTTTAAGGTTCCAAGCCCTCAAAATGCCATCACCTCTCGTGCCCGTAAACAAGCCTCACAACCTGCCAATGGCAGTGAGACAGATGAGCCAGTCAGCACCTCTGAGAGTGATGGAGGTGGTGCGCGAGAGGATGAAGTTTGCACCCCTTCAACCCTCCAAATCAATGAGGAGATGCAAAGAATGTTGACACAACTGCGTGAGTGTGAGTTTGAAGATGATTGTGACTCTCTGGCTTGGGAAGAGACAGAAGAAACGCTTCTTCTCTGGGAGGATTTCCCAGGATGCACTGTAACAACAGACACCAGTCAGGGCGAGcagGAGGAGTGTTTGGAAAAGGTGATTAAGGACACAGAATGTCTTTTTAAGTCCAGGGAGAAGGAATATCAGGAGACTATAGATCAGATAGagTTGGAATTGGCCACAGCAAAGTCTGACATGAACCGTCATCTTCATGAGTACATGGAGATGTGCAGCATGAAGAGAGGACTGGATGTGCAGATGGAAACCTGCAGGAGACTCATCACCCAGAGTGGAAACAATAAATCCACTTCTCCTATACCTGGAGGGGGTATAGATACAAACGGAGAAACTGAGAGAGATAAAATGGAGGAAGGTGGAAGATAATGACGACAACTGATCCGACGATGGTGTTTGAAAGAAGAAAAAGTGTCTCTCATCTCTTCATGGCTTCATTTAACCTGGACTGGCTCTTCTTGTTGTGTTTCCGCATGTTTGTCCAGTCACTCTAGAGGGGGTAAATGgaattacattgtaaaaaaaaaaaaaaaaa
>TCONS_00020724
GCATTTCATGGAAAGCTCAAAGGATTCCAAGTGTTCAAAGTTTTCCATCAGGGAAGTCGTTAATCTAGTATTTAATATTCCCTCTGGTAAAATCTCATCTGCTAGTGAGTGCTTATGCTTTGGCAGTGAGATAATGTTTCTGtggcatctctctctctctgtctctgtctctctctccctctctctctctctctctctctctccctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctcagcagGAGGAGTGTTTGGAAAAGGTGATTAAGGACACAGAATGTCTTTTTAAGTCCAGGGAGAAGGAATATCAGGAGACTATAGATCAGATAGagTTGGAATTGGCCACAGCAAAGTCTGACATGAACCGTCATCTTCATGAGTACATGGAGATGTGCAGCATGAAGAGAGGACTGGATGTGCAGATGGAAACCTGCAGGAGACTCATCACCCAGAGTGGAAACAATAAATCCACTTCTCCTATACCTGGAGGGGGTATAGATACAAACGGAGAAACTGAGAGAGATAAAATGGAGGAAGGTGGAAGATAATGACGACAACTGATCCGACGATGGTGTTTGAAAGAAGAAAAAGTGTCTCTCATCTCTTCATGGCTTCATTTAACCTGGACTGGCTCTTCTTGTTGTGTTTCCGCATGTTTGTCCAGTCACTCTAGAGGGGGTAAATGgaattacattgtaaaaa
>TCONS_00020725
ATGCCCGATCTGCAGCGCTTCAGTTTTCCGTACCGTAGCATGAATTCTcctctccatcatcatcatcatcatcatcagcagcagcagcaccaaCAGCATCAGCACCCAGAAGGACCCGGTCATCCCGATTCTCCCTCCAGTTTACTCCCCGAGGCAGCGATCTTCGGAGCTCCCGATCCGTCCTCCTTTTTTCTCGGAGAACAACCCGTCCCTGCTGGTGTCACCCAATCCGCACTTGACCTTACTGCATCTTCCTACCTGCACTTTAGTCCATCCCTTCACTGGTCCCAACCTCCTCCACCTACAGCCATGGCATTAAGAAACGATCTGGGATCCAATATCAGCGTCCTAAAGACTCTCAATCTGCGGTTCCGTTGCTTTCTGGCTAAAGTGCATGAACTGGAGAGACGCAATAAAATATTGGAGTTACAGCTGCAGCAGGCTTTAGACAGCAATAACAAGGAAATTGGTGTGCAGACTGGCTTTATTGGGCCCATTGCTGTCCGGCCTGGGTCTTTATCCTTTCAAAACACTAACAACTCTGCCAAACGACCCACTACATTGTTTATGCCTTCTCTTACAACTGTCCTCAAGCTTGAACCTAATAAACCTGGGGATGAGACCACATCAGACCCGAATATTAATagaaacccaactatcacaCCTGCTTCGGCCAACACAAACAACTCCAATAATACTCCACATGTAAGCAGTGTTGGAACCGGGACATCTCCAAACCCTCCTCCTCGCTTCCTCCCGGGCACTATCTGGTCCTACAACCACACACGGAAACTGGGAAGCGGAACAGAGACTCGGGTCACCAGTCCTGGAGTTTCGTGGGTCCACCCAGACGGAGTGGGTGTACAGATAGACACCATCACCCCAGAGATTAGAGCACTTTACAACGTCCTGGCCAAAATCAAAAGAGAGAGGGATGAGTACAAGAGAAGGTGGGAAGAGGAATACACTATGAGAATGGACATGGAACAAAGAATGAATGATCTGCAGGAGGACCTACAGGAGAGTGAAGTATGTCAGGATGAATTGGCCCTCAAGGTCCAACAGCTGAAAGCTGAACTTGTGCTCTTTAAAGGACTCATGAGCAATAACCTGTCGGAGCTGGACAGTAAAATCCAAGAGAAGGCCATGAAAGTGGACATGGACATCTGCAGACGCATTGACATCACAGCTCGTCTGTGTGATGTCGCCCAACAAAGAAACTGCGAAGATCCTATCAAGATCTTTAAGGTTCCAAGCCCTCAAAATGCCATCACCTCTCGTGCCCGTAAACAAGCCTCACAACCTGCCAATGGCAGTGAGACAGATGAGCCAGTCAGCACCTCTGAGAGTGATGGAGGTGGTGCGCGAGAGGATGAAGTTTGCACCCCTTCAACCCTCCAAATCAATGAGGAGATGCAAAGAATGTTGACACAACTGCGTGAGTGTGAGTTTGAAGATGATTGTGACTCTCTGGCTTGGGAAGAGACAGAAGAAACGCTTCTTCTCTGGGAGGATTTCCCAGGATGCACTGTAACAACAGACACCAGTCAGGGCGAGcagGAGGAGTGTTTGGAAAAGGTGATTAAGGACACAGAATGTCTTTTTAAGTCCAGGGAGAAGGAATATCAGGAGACTATAGATCAGATAGagTTGGAATTGGCCACAGCAAAGTCTGACATGAACCGTCATCTTCATGAGTACATGGAGATGTGCAGCATGAAGAGAGGACTGGATGTGCAGATGGAAACCTGCAGGAGACTCATCACCCAGAGTGGAAACAATAAATCCACTTCTCCTATACCTGGAGGGGGTATAGATACAAACGGAGAAACTGAGAGAGATAAAATGGAGGAAGGTGGAAGATAA

Function

symbol description
iffo1b Predicted to be located in intermediate filament. Orthologous to human IFFO1 (intermediate filament family orphan 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-308 Predicted to be located in intermediate filament. Orthologous to human IFFO1 (intermediate filament family orphan 1).

Ensembl:

ensembl_id ENSDARG00000062108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020723 False 2447 mRNA 0.47 9 17121986 17162843
TCONS_00020724 False 730 processed_transcript 0.44 3 17121998 17129466
TCONS_00020725 True 1866 mRNA 0.49 11 17122152 17162485

Neighbor

gene id symbol gene type direction distance location
XLOC_010576 CU861451.1 coding downstream 1800 17120064 ~ 17120186 (-)
XLOC_010575 si:dkey-260g12.1 coding downstream 5487 17102103 ~ 17116499 (-)
XLOC_010574 tnfrsf1a coding downstream 49425 17060758 ~ 17072561 (-)
XLOC_010573 plekhg6 coding downstream 65356 17007089 ~ 17056630 (-)
XLOC_010572 uts2r3 coding downstream 360822 16757219 ~ 16761164 (-)
XLOC_010578 opn9 coding upstream 350 17163193 ~ 17188294 (-)
XLOC_010579 gapdh coding upstream 26996 17189839 ~ 17200120 (-)
XLOC_010580 wu:fj39g12 coding upstream 41408 17204251 ~ 17207754 (-)
XLOC_010581 nop2 coding upstream 71697 17234540 ~ 17251898 (-)
XLOC_010582 CR936322.1 coding upstream 82065 17244908 ~ 17245047 (-)
XLOC_010626 CR392024.2 misc upstream 3732269 20895112 ~ 20895175 (-)
XLOC_010568 NA non-coding downstream 517906 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 548456 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 non-coding downstream 592014 16526975 ~ 16529972 (-)
XLOC_010562 NA non-coding downstream 851551 16266556 ~ 16270435 (-)
XLOC_010583 CR936322.2 non-coding upstream 84379 17247222 ~ 17247363 (-)
XLOC_010592 NA non-coding upstream 541987 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 660604 17823447 ~ 17824848 (-)
XLOC_010595 NA non-coding upstream 974799 18137642 ~ 18140068 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_08851218_08869647 IFFO1B coding CI01000016 null 8850872 ~ 8869647 (-)