XLOC_010578 (opn9)


Basic Information

Item Value
gene id XLOC_010578
gene name opn9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17163193 ~ 17188294 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020726
CTGCCAGAGTGACCACAGCAAAATTGATTCACTCTTGCTGTATAAACAGAGAGCAACAGGAACAAAAGAGGCTTACGTCTGAAATGCAGGCATTTTTTCTTTGAGATTAACTGAAAGCAGCAGACTGAAAAAGACGGAGAGTAAACACAAGAATTGGACTGACCAAAAGGAatTTAATGTCTAAGAGAGTGAATGGCTCATGGATGGGGTCTGTCTCTGTCCCATCATCCATCCCTCATGCCTTCCGCTCACAGCTATCCCCATCTGCTGACCTCAGCATTGCCGTCTTCCTCATCATCACGGGCGTGGTGTCAGTATTTGGGAATGGGTTAGTTTTGTTGGTTTATGGTCAGCGGAGAAAGAAGCTCAGAGCGCATGAGTTGATGACCATCAATCTGGCTGTGTGTGATTTCGGCTACAGTCTGCTGGGGGCGCCATGTATCATCATCTCGAGTCTGTCCCATGCCTGGATTTTTGGCGAAACAGGATGTATATGGTATGGAATTCAGGGCTTTGTTTTCGGGATTGGATCTCTCATCACCACCTGCCTCATATCCCTTGACCGCTGCTTTAAGATTTGCAGCTTTCGATATGGTCAGTGGGTTGAAAGAAAACATGCCTCTCTATCTGTCACTCTGGTTTGGATCTATACATTGTTCTGGGCCTCACTTCCCATGTTTGGCTTTGGTAGTTATGGCCCCGAACCATTTGGAACCAGCTGCACCATAAACTGGTGGAGGATGAACTCATCACTTACTGATAGAATCTATATATTCCTGATCCTGTCCCTCTGCTTTGGAGTTCCTACCCTCATTATCATCGCCTCATACCTTGCTATCGTAATCAGGGTGTATTGGTCTAGTCACATTTTGGCTTCAATCCCTTCATCAAACGTCACTCACAACAGCAAAGATCTTCGACTGACAAAGATCGCGGCAGTGGTGTGTTCCTCATTTCTGATTGCCTGGACTCCCTATGCGATTGTTTCACTCTACTCTGCTGTTATGGCCAGAGAGGAACAGCTTGGGGAAGATGGGGGAACGGCCATCCCGGGTGGAATAACAGGAACAGGGATTGGCCGTGGTGGAGGGTTCCCTGACGTCTATGCTTTTCCCTTCCTCATTAACTGGACCTCTTCAGAGCAATTCGGAGATGTTTTTGGCTCCTGGAGGAACATGACTTCAGGTCATTCTCATTCAGTAGGGCATCATGGTTCAAATGTAGGTTCTGGACATGGTGGAACAGGTGGACACCACTCACTTCCTGAGTCCATCTTGAAACCAGAGTTCTCACTTATCCCTGCTATTTTTGCCAAGTCTCACTGCATGATAAACCCCTTCATCTACCAGATCATGAACCGCGACTTCAGAGAGGACGTGTATGACCTCCTGTGCATGCGAGGAAAAGATGGAGAGAGAAGGAGGTCAAGAAGCACAGATGGAAGTGATTCTGATGGGCATCGTGGGAGCGTCACTCTCTCTTATATTCACAGCTGGAGGAGAAGAAGCACACCAACCAATCAGCCATCcgaaaaatgtgtgaaaaaagaGTCCTCTCGTAAGAGTAGAGGAAAAAGAGGGTCCTGTCAGGATAATAATTCCATTGGGTGGGCAACCTTAGATACAACAACCTTAGACACACAGGTCAACTTAGAAAGAGAGAAAGGGAAAGAGGTGGAAATAGAAACCCAAAAAGTTTTCAAAGAATCCtcttccagcagcttgttgacaGTCAAAGAGTGATGCATGCATCTAAATACTCAGACTTCAGAGTGTGCAGTTTATGCAGTTAGTTACAGGTAGTTCAAAGTTGTAAGCTATCTAAGTTAAGTATTATTAAGTCTATATTATGTGTTATGTTTtagttaaatagtttttttacccagtaaatgtcatgtcatgtttttagtcatttacatatttattttttgatcctGTGTTTATATGTAAAGGccacacttatttatttatttatttatttatttatttatttatttatttatttatttacttatttatttatttatttatttaccttttgtgcatttacatattgtgtgtatttacatattacaGGCCTATTTATGTTTCTACattacatacatttacaaataacagtgtcatgtaaataaaatgtacaacaaTAAAAACCATTTGACACCTTTAT
>TCONS_00020727
ATGTCTAAGAGAGTGAATGGCTCATGGATGGGGTCTGTCTCTGTCCCATCATCCATCCCTCATGCCTTCCGCTCACAGCTATCCCCATCTGCTGACCTCAGCATTGCCGTCTTCCTCATCATCACGGGCGTGGTGTCAGTATTTGGGAATGGGTTAGTTTTGTTGGTTTATGGTCAGCGGAGAAAGAAGCTCAGAGCGCATGAGTTGATGACCATCAATCTGGCTGTGTGTGATTTCGGCTACAGTCTGCTGGGGGCGCCATGTATCATCATCTCGAGTCTGTCCCATGCCTGGATTTTTGGCGAAACAGGATGTATATGGTATGGAATTCAGGGCTTTGTTTTCGGGATTGGATCTCTCATCACCACCTGCCTCATATCCCTTGACCGCTGCTTTAAGATTTGCAGCTTTCGATATGGTCAGTGGGTTGAAAGAAAACATGCCTCTCTATCTGTCACTCTGGTTTGGATCTATACATTGTTCTGGGCCTCACTTCCCATGTTTGGCTTTGGTAGTTATGGCCCCGAACCATTTGGAACCAGCTGCACCATAAACTGGTGGAGGATGAACTCATCACTTACTGATAGAATCTATATATTCCTGATCCTGTCCCTCTGCTTTGGAGTTCCTACCCTCATTATCATCGCCTCATACCTTGCTATCGTAATCAGGGTGTATTGGTCTAGTCACATTTTGGCTTCAATCCCTTCATCAAACGTCACTCACAACAGCAAAGATCTTCGACTGACAAAGATCGCGGCAGTGGTGTGTTCCTCATTTCTGATTGCCTGGACTCCCTATGCGATTGTTTCACTCTACTCTGCTGTTATGGCCAGAGAGGAACAGCTTGGGGAAGATGGGGGAACGGCCATCCCGGGTGGAATAACAGGAACAGGGATTGGCCGTGGTGGAGGGTTCCCTGACGTCTATGCTTTTCCCTTCCTCATTAACTGGACCTCTTCAGAGCAATTCGGAGATGTTTTTGGCTCCTGGAGGAACATGACTTCAGGTCATTCTCATTCAGTAGGGCATCATGGTTCAAATGTAGGTTCTGGACATGGTGGAACAGGTGGACACCACTCACTTCCTGAGTCCATCTTGAAACCAGAGTTCTCACTTATCCCTGCTATTTTTGCCAAGTCTCACTGCATGATAAACCCCTTCATCTACCAGATCATGAACCGCGACTTCAGAGAGGACGTGTATGACCTCCTGTGCATGCGAGGAAAAGATGGAGAGAGAAGGAGGTCAAGAAGCACAGATGGAAGTGATTCTGATGGGCATCGTGGGAGCGTCACTCTCTCTTATATTCACAGCTGGAGGAGAAGAAGCACACCAACCAATCAGCCATCcgaaaaatgtgtgaaaaaagaGTCCTCTCGTAAGAGTAGAGGAAAAAGAGGGTCCTGTCAGGATAATAATTCCATTGGGTGGGCAACCTTAGATACAACAACCTTAGACACACAGGTCAACTTAGAAAGAGAGAAAGGGAAAGAGGTGGAAATAGAAACCCAAAAAGTTTTCAAAGAATCCtcttccagcagcttgttgacaGTCAAAGAGTGA

Function

symbol description
opn9 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; integument; nervous system; and testis.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007602 phototransduction biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-390 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; integument; nervous system; and testis.

Ensembl:

ensembl_id ENSDARG00000104231

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020726 False 2166 mRNA 0.42 9 17163193 17188294
TCONS_00020727 True 1566 mRNA 0.47 8 17163617 17175731

Neighbor

gene id symbol gene type direction distance location
XLOC_010577 iffo1b coding downstream 350 17121986 ~ 17162843 (-)
XLOC_010576 CU861451.1 coding downstream 43007 17120064 ~ 17120186 (-)
XLOC_010575 si:dkey-260g12.1 coding downstream 46694 17102103 ~ 17116499 (-)
XLOC_010574 tnfrsf1a coding downstream 90632 17060758 ~ 17072561 (-)
XLOC_010573 plekhg6 coding downstream 106563 17007089 ~ 17056630 (-)
XLOC_010579 gapdh coding upstream 1545 17189839 ~ 17200120 (-)
XLOC_010580 wu:fj39g12 coding upstream 15957 17204251 ~ 17207754 (-)
XLOC_010581 nop2 coding upstream 46246 17234540 ~ 17251898 (-)
XLOC_010582 CR936322.1 coding upstream 56614 17244908 ~ 17245047 (-)
XLOC_010583 CR936322.2 coding upstream 58928 17247222 ~ 17247363 (-)
XLOC_010626 CR392024.2 misc upstream 3706818 20895112 ~ 20895175 (-)
XLOC_010568 NA non-coding downstream 559113 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 589663 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 non-coding downstream 633221 16526975 ~ 16529972 (-)
XLOC_010562 NA non-coding downstream 892758 16266556 ~ 16270435 (-)
XLOC_010592 NA non-coding upstream 516536 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 635153 17823447 ~ 17824848 (-)
XLOC_010595 NA non-coding upstream 949348 18137642 ~ 18140068 (-)

Expression


Co-expression Network