XLOC_010579 (gapdh)


Basic Information

Item Value
gene id XLOC_010579
gene name gapdh
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17189839 ~ 17200120 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020728
AAAGTCCAGGGGGCGTGGTCAATGCTATCGCACCAGATATAAATTAACCTCGTGTTCGTAATCAGTCCACTCACACCAAGTGTCAGGACGAACAGAGGCTTCTCACAAACGGTAAATTTAGTTATTTCATGTTTCAAATGCTTGAATTATTTAGTGTTTAATTATGTAGTCTTTGCTCAGATTGCGCTGGTGAAGCCTTTGCAAATGTTAGCAACTTTTAAATATATGTGCATGTTAATGGCATGGAGCAACATTTCTAATGAAAGCTGAGAGTTCATGCTCTTTAGAACTTCTAGCCTACATTTTCTGGCCAATTGGGAAATGCTTGAGTATGAATACAACAGGCTACTGTGAACTACAAATGTGTATGAACTTTTTGTTCACTCTCTATCTGTAGTTAGAGGTGTTGCAGTTTCACAACCTGTACTTTGTTCCCATAACGAAAGACGCCTATAATAACGTGTGAATTAATTACACCCTTTTGTTTTCCTTCCAGAGGACACAACCAAATCAGGCATAATGGTTAAAGTTGGTATTAACGGattcgGTCGCATTGGCCGTCTGGTGACCCGTGCTGCTTTCTTGACCAAGAAAGTGGAGATTGTGGCCATCAATGACCCATTCATTGACCTTGATTACATGGTTTACATGTTCCAGTACGACTCCACCCATGGAAAGTACAAGGGTGAGGTTAAGGCAGAAGGCGGCAAACTGGTCATTGATGGTCATGCAATCACAGTCTATAGCGAGAGGGACCCAGCCAATATTAAGTGGGGTGATGCAGGTGCTACTTATGTTGTGGAGTCTACTGGTGTCTTCACTACTATTGAGAAGGCTTCTGCTCACATTAAGGGTGGTGCAAAGAGAGTCATCATCTCTGCCCCAAGTGCAGATGCCCCCATGTTTGTCATGGGTGTCAACCATGAGAAATATGACAACTCTCTCACAGTTGTAAGCAATGCCTCCTGCACCACCAACTGCCTGGCTCCTTTGGCAAAGGTCATTAATGATAACTTTGTCATCGTTGAAGGTCTTATGAGCACTGTTCATGCCATCACAGCAACACAGAAGACCGTTGATGGGCCCTCTGGGAAGCTGTGGAGGGATGGCCGTGGTGCCAGTCAGAACATCATCCCAGCCTCCACTGGGGCTGCCAAGGCTGTAGGCAAAGTAATTCCTGAGCTCAATGGCAAGCTTACTGGTATGGCCTTCCGTGTCCCCACCCCCAATGTCTCTGTTGTGGATCTGACAGTCCGTCTTGAGAAACCTGCCAAGTATGATGAGATCAAGAAAGTCGTCAAGGCTGCAGCTGATGGGCCCATGAAAGGAATTCTGGGATACACGGAGCAccagGTTGTGTCCACTGACTTCAATGGGGATTGCCGTTCATCCATCTTTGACGCTGGTGCTGGTATTGCTCTCAACGATCACTTTGTCAAGCTGGTCACATGGTATGACAATGAGTTCGGTTACAGCAACCGTGTATGTGACCTGATGGCACACATGGCCTCCAAGGAGTAGATGTGACCCCtttgctgtttcttttttttgatACGCGACCATTCTCCCATCTGGTTGAATGTTTGCACCACGTGCCTGGAAGGAAATTACATGCTTAAATTGAAGaccaatattatttttatatactctGTTCTGTTTCGTGTGTGaggttaaaaataaatgttgactTCAAAGGCTTTTCTGTCTGTTAACAACTTGCGATGGAATAAAAGTCCTCTGTTtgtgagaaatggagaaaagCTGTCATTTGTTATTTCAATAGCTTGTTCGGTGCAATCATTAATCTTGGAGGGttcttattttaaagaatgttttctttttgaccagggtttttttttttttttttaaataaaccaagTCCTAACAGTTTACAGGTATGCATAATGGGGAAACTTAACTGACAAGCATCGGGTGGGGTCTTTTACTTTAGCCCATCTACTTTAATATGTTATTTAGAGCTAGATGGATAGTTTTATTACAAATAGTGACTACTACCAGCAATTTGCATAAGTGACTAAATGAACATTTTTGTGTAAATACTGGGGAAAACTTTAAAAGgaaagtttacccaaaactgatcCTTTCCAGGGTCAAATTTGATCCTAAGGGCTGGTATCTTGCAGGGTTTTGCCAACtgtaatcagacacacctgaacaagctaatcaatctTGCTGTAAGCTTTGTTGCAGGTGTTTAAGGAAAGTTAGAGCTGCACTTTGCCAGACTGAGTTTAGACCTTTTAGTGTCCTTCTGCCAAAATCTCAATCATATACTCTAGGTTGGTGGGGGAAAACATCTTTAGTAGaaacaaataattataatttattattttgtctcAAACCTGACCCATTTTCTCCTATGAACAAAGAGAATTGCTCCATTTGAGTATAGCGGTGTTAATAAATTAGGGGATGAGTAAATAACAGAATTTAGAATTTTAGTTAATgctttacaaaaacagtacataaTGTACTAACATTTAAAGCAGGAATGTCTaactgtgtgtctgtctgtcaaaTATTGTCGGCAGTGAAATATAACAAGCCAATAAACCTTGTCATGAGTAATTTCctaattcattaaataaaaaaaatattactttgaaTAGTAATAACTAATCCAGTGTAACTTTTTTTCAGATTGaaatttattgcaataaaaacaacacatgGTGGAATTCATTGCTAAACACACTAGTTAAACAGaatcttgcctttattcactCACCAGAGATCTTGTTTTCTGTCctctgtatttacatttttaaacttaatcTGACTAATTTTCATTGCAACCTTTAACTTTAGAtagtctctttttctttttgtaactTAACAAAACGTATGCAAACAAATATAAGGTTGCAATAAATTTGAAATGATAATCTCTAAACCGTTCTCAGATGGCAGGGTGGACCAAATCAAAGTTTTTTTTGGGACACTTTTGGCCAGCAGGACCTAGTTTGAGTATCTTTAAACCTTATATGGACACTTAACTCAAACCTTGACATTTTAACAGGAATTCATTAAGAAGTAATAATAATGTTCCCCCCAGAGACTGGGCAtgggataacttttttttttttcaaggtatacagtggtttgtaaaagtcaaggttttaaaaccatcaacaTGCTAAACATGCTATACTGCTAAACTGTTTCTacagtatatgtaagatttttttttatggttttaatttttttttaggacaacggtATCTTCGGCAGAAAATGTagccaaaaatgtcattttaatttgtaaagaaatttgtgtttttgaaactaatggagacagcagaagtcaatgattcatttgagttATTCAGTCTGACATGttcactgctccaaaatactttaaatgtttctcaaattaaaacatattgtgcttaaaagggaaaaaaaaagaagtttttttttttttacccaaacatttaaataatttattttaagtagTAATTACTATATTGTGAACccgtgatgtttttatccaaggttatcaaatCGTCAGAATCTTCTACCGGCCCATACCTAGTTATGAAGACCATTATACATTAACAAGTCATGAGTTTATATTGGTCAAGTTGCacttttacttaatattatttactttatatacaaGTTTAGCTGAAACTAAAGTTTTAATGTCAACAAACATGAGTAATTAAGTTAGCCATTTTTCACACACATATGACTTGTAAattgtttggtcacactttattttgatggtccgtctgttgaatttaagttacattagaTTACATTAGACTCATTaggttataagtagactgttagggtagggttaatgtaagttgacatgtacttgcaaagtttcttatagtcagttaaagaTCTGTTAAAGGAGCAATATACATTTGATGGAGTGGCCCTCCTAATATCTACAATAAAGTCTTTTGAAGCTAAAtatcaaacccaacaggaagtcagatttTTTTAACTTCCTCTGCTGAAAATGTGCAGTTtctgccatttccaggcgttgtattttaacaaacttctCCAAGGGATTTTAtcagatcaacaccaaaattgctTGTTGTAATCTAAAGGCCTGGTGGTGTCCATGGCGGCCTTTCCATCTTTGTTTCGCTATGAAACAGGAAGTTGCTATAACTCAGGCATCAGCCAAACCTGTTAATAGCGTCAAGCAAtttctaagtgtgaactcttgaaattgtgAAAATCTAGAGTTTTTGTTGAAAGGCGTGTGACAAATCTCAGTGTTTCGGCATGGAAAAGCAAGCAGTTATTACTCAGGCTTACTATGTCCAGTCTGCTCCAAATTCCGCACCATTGATTATAGTACTacactgaagacatctacatgtgAATATTCAATCGCagtcatagcaccacctgctgacagaagttCATTGTGTTCTGTCAGCGGTGAGCCCAGGTGCAAGGTCCCtttcattgctgcttgcagctttaatgcATGTACtattattgtgaagtgttaccaatTTTTGTATAAACTATCCTTTAATTAAGGTTTATTAAGACTCAAGTAAATTAATTGAAGTGtaatttaagtgatttt
>TCONS_00020729
TAACCTCGTGTTCGTAATCAGTCCACTCACACCAAGTGTCAGGACGAACAGAGGCTTCTCACAAACGAGGACACAACCAAATCAGGCATAATGGTTAAAGTTGGTATTAACGGattcgGTCGCATTGGCCGTCTGGTGACCCGTGCTGCTTTCTTGACCAAGAAAGTGGAGATTGTGGCCATCAATGACCCATTCATTGACCTTGATTACATGGTTTACATGTTCCAGTACGACTCCACCCATGGAAAGTACAAGGGTGAGGTTAAGGCAGAAGGCGGCAAACTGGTCATTGATGGTCATGCAATCACAGTCTATAGCGAGAGGGACCCAGCCAATATTAAGTGGGGTGATGCAGGTGCTACTTATGTTGTGGAGTCTACTGGTGTCTTCACTACTATTGAGAAGGCTTCTGCTCACATTAAGGGTGGTGCAAAGAGAGTCATCATCTCTGCCCCAAGTGCAGATGCCCCCATGTTTGTCATGGGTGTCAACCATGAGAAATATGACAACTCTCTCACAGTTGTAAGCAATGCCTCCTGCACCACCAACTGCCTGGCTCCTTTGGCAAAGGTCATTAATGATAACTTTGTCATCGTTGAAGGTCTTATGAGCACTGTTCATGCCATCACAGCAACACAGAAGACCGTTGATGGGCCCTCTGGGAAGCTGTGGAGGGATGGCCGTGGTGCCAGTCAGAACATCATCCCAGCCTCCACTGGGGCTGCCAAGGCTGTAGGCAAAGTAATTCCTGAGCTCAATGGCAAGCTTACTGGTATGGCCTTCCGTGTCCCCACCCCCAATGTCTCTGTTGTGGATCTGACAGTCCGTCTTGAGAAACCTGCCAAGTATGATGAGATCAAGAAAGTCGTCAAGGCTGCAGCTGATGGGCCCATGAAAGGAATTCTGGGATACACGGAGCAccagGTTGTGTCCACTGACTTCAATGGGGATTGCCGTTCATCCATCTTTGACGCTGGTGCTGGTATTGCTCTCAACGATCACTTTGTCAAGCTGGTCACATGGTATGACAATGAGTTCGGTTACAGCAACCGTGTATGTGACCTGATGGCACACATGGCCTCCAAGGAGTAGATGTGACCCCtttgctgtttcttttttttgatACGCGACCATTCTCCCATCTGGTTGAATGTTTGCACCACGTGCCTGGAAGGAAATTACATGCTTAAATTGAAGaccaatattatttttatatactctGTTCTGTTTCGTGTGTGaggttaaaaataaatgttgactTCAAAGGCTTTTCTGTCTGTTAACAACTTGCGATGGAATAAAAGTCCTCTGTTtgtgagaaatggagaaaa
>TCONS_00020730
ATTTCATGTTTCAAATGCTTGAATTATTTAGTGTTTAATTATGTAGTCTTTGCTCAGATTGCGCTGGTGAAGCCTTTGCAAATAGGACACAACCAAATCAGGCATAATGGTTAAAGTTGGTATTAACGGattcgGTCGCATTGGCCGTCTGGTGACCCGTGCTGCTTTCTTGACCAAGAAAGTGGAGATTGTGGCCATCAATGACCCATTCATTGACCTTGATTACATGGTTTACATGTTCCAGTACGACTCCACCCATGGAAAGTACAAGGGTGAGGTTAAGGCAGAAGGCGGCAAACTGGTCATTGATGGTCATGCAATCACAGTCTATAGCGAGAGGGACCCAGCCAATATTAAGTGGGGTGATGCAGGTGCTACTTATGTTGTGGAGTCTACTGGTGTCTTCACTACTATTGAGAAGGCTTCTGCTCACATTAAGGGTGGTGCAAAGAGAGTCATCATCTCTGCCCCAAGTGCAGATGCCCCCATGTTTGTCATGGGTGTCAACCATGAGAAATATGACAACTCTCTCACAGTTGTAAGCAATGCCTCCTGCACCACCAACTGCCTGGCTCCTTTGGCAAAGGTCATTAATGATAACTTTGTCATCGTTGAAGGTCTTATGAGCACTGTTCATGCCATCACAGCAACACAGAAGACCGTTGATGGGCCCTCTGGGAAGCTGTGGAGGGATGGCCGTGGTGCCAGTCAGAACATCATCCCAGCCTCCACTGGGGCTGCCAAGGCTGTAGGCAAAGTAATTCCTGAGCTCAATGGCAAGCTTACTGGTATGGCCTTCCGTGTCCCCACCCCCAATGTCTCTGT
>TCONS_00020731
ATAATCAGTGCTCGTAAACCATGATCCACACAAGAGAACAGAGTTTAAACAGTCAGCAACTTGTCAGCAAAGTTCAACAAACTGCTCGGCTAAAATTCCACCTGAAGAAAATTAGTTATCTGGAGTGAACTTGATGTGACGTGACAGACGTGCGATTTGTGTCCATCAGGGTTACGTTCAGAAGCTCGTCTGGTTCTGCCTGAATCATAGGACACAACCAAATCAGGCATAATGGTTAAAGTTGGTATTAACGGattcgGTCGCATTGGCCGTCTGGTGACCCGTGCTGCTTTCTTGACCAAGAAAGTGGAGATTGTGGCCATCAATGACCCATTCATTGACCTTGATTACATGGTTTACATGTTCCAGTACGACTCCACCCATGGAAAGTACAAGGGTGAGGTTAAGGCAGAAGGCGGCAAACTGGTCATTGATGGTCATGCAATCACAGTCTATAGCGAGAGGGACCCAGCCAATATTAAGTGGGGTGATGCAGGTGCTACTTATGTTGTGGAGTCTACTGGTGTCTTCACTACTATTGAGAAGGCTTCTGCTCACATTAAGGGTGGTGCAAAGAGAGTCATCATCTCTGCCCCAAGTGCAGATGCCCCCATGTTTGTCATGGGTGTCAACCATGAGAAATATGACAACTCTCTCACAGTTGTAAGCAATGCCTCCTGCACCACCAACTGCCTGGCTCCTTTGGCAAAGGTCATTAATGATAACTTTGTCATCGTTGAAGGTCTTATGAGCACTGTTCATGCCATCACAGCAACACAGAAGACCGTTGATGGGCCCTCTGGGAAGCTGTGGAGGGATGGCCGTGGTGCCAGTCAGAACATCATCCCAGCCTCCACTGGGGCTGCCAAGGCTGTAGGCAAAGTAATTCCTGAGCTCAATGG
>TCONS_00020732
ACTCACACCAAGTGTCAGGACGAACAGAGGCTTCTCACAAACGAGGACACAACCAAATCAGGCATAATGGTTAAAGTTGGTATTAACGGattcgGTCGCATTGGCCGTCTGGTGACCCGTGCTGCTTTCTTGACCAAGAAAGTGGAGATTGTGGCCATCAATGACCCATTCATTGACCTTGATTACATGGTTTACATGTTCCAGTACGACTCCACCCATGGAAAGTACAAGGGTGAGGTTAAGGCAGAAGGCGGCAAACTGGTCATTGATGGTCATGCAATCACAGTCTATAGCGAGAGGGACCCAGCCAATATTAAGTGGGGTGATGCAGGTGCTACTTATGTTGTGGAGTCTACTGGTGTCTTCACTACTATTGAGAAGGCTTCTGCTCACATTAAGGGTGGTGCAAAGAGAGTCATCATCTCTGCCCCAAGTGCAGATGCCCCCATGTTTGTCATGGGTGTCAACCATGAGAAATATGACAACTCTCTCACAGTTGTAAGCAATGCCTCCTGCACCACCAACTGCCTGGCTCCTTTGGCAAAGGTCATTAATGATAACTTTGTCATCGTTGAAGGTCTTATGGTAAGATTAAATGGCCTTTCCAATCTCCTCTAAAAGCCTTTTGACCCTAAAGTGATTGAGACCTGCTGTGATGCACCACTTTATTTAAGCCCTGCACTGGACTATGCTTTTTAAAGCAATTAAATGTGGAAGTCACGATTTATACAAATTTTTCAAGAACGTCCTGGTTTTCCATTTCAGAGCACTGTTCATGCCATCACAGCAACACAGAAGACCGTTGATGGGCCCTCTGGGAAGCTGTGGAGGGAT
>TCONS_00020733
ACAAACGGTAAATTTAGTTATTTCATGTTTCAAATGCTTGAATTATTTAGTGTTTAATTATGTAGTCTTTGCTCAGATTGCGCTGGTGAAGCCTTTGCAAATGTTAGCAACTTTTAAATATATGTGCATGTTAATGGCATGGAGCAACATTTCTAATGAAAGCTGAGAGTTCATGCTCTTTAGAACTTCTAGCCTACATTTTCTGGCCAATTGGGAAATGCTTGAGTATGAATACAACAGGCTACTGTGAACTACAAATGTAGGACACAACCAAATCAGGCATAATGGTTAAAGTTGGTATTAACGGattcgGTCGCATTGGCCGTCTGGTGACCCGTGCTGCTTTCTTGACCAAGAAAGTGGAGATTGTGGCCATCAATGACCCATTCATTGACCTTGATTACATGGTTTACATGTTCCAGTACGACTCCACCCATGGAAAGTA

Function

symbol description
gapdh Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; microtubule binding activity; and peptidyl-cysteine S-nitrosylase activity. Predicted to be involved in several processes, including glycolytic process; peptidyl-cysteine S-trans-nitrosylation; and protein stabilization. Predicted to act upstream of or within apoptotic process and glucose metabolic process. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; integument; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0006096 glycolytic process biological_process
GO:0035606 peptidyl-cysteine S-trans-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0050821 protein stabilization biological_process
GO:0006006 glucose metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0035605 peptidyl-cysteine S-nitrosylase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00710 Carbon fixation in photosynthetic organisms
ko04066 HIF-1 signaling pathway
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05010 Alzheimer disease
ko05415 Diabetic cardiomyopathy
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030115-1 Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; microtubule binding activity; and peptidyl-cysteine S-nitrosylase activity. Predicted to be involved in several processes, including glycolytic process; peptidyl-cysteine S-trans-nitrosylation; and protein stabilization. Predicted to act upstream of or within apoptotic process and glucose metabolic process. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; integument; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).

Ensembl:

ensembl_id ENSDARG00000043457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020728 False 4585 mRNA 0.37 11 17189839 17197669
TCONS_00020729 False 1331 mRNA 0.47 12 17192664 17197625
TCONS_00020730 False 825 mRNA 0.48 9 17193677 17197546
TCONS_00020731 False 902 mRNA 0.48 8 17193990 17200120
TCONS_00020732 False 834 lncRNA 0.46 7 17194073 17197601
TCONS_00020733 True 445 mRNA 0.39 4 17195185 17197565

Neighbor

gene id symbol gene type direction distance location
XLOC_010578 opn9 coding downstream 1545 17163193 ~ 17188294 (-)
XLOC_010577 iffo1b coding downstream 26996 17121986 ~ 17162843 (-)
XLOC_010576 CU861451.1 coding downstream 69653 17120064 ~ 17120186 (-)
XLOC_010575 si:dkey-260g12.1 coding downstream 73340 17102103 ~ 17116499 (-)
XLOC_010574 tnfrsf1a coding downstream 117278 17060758 ~ 17072561 (-)
XLOC_010580 wu:fj39g12 coding upstream 4131 17204251 ~ 17207754 (-)
XLOC_010581 nop2 coding upstream 34420 17234540 ~ 17251898 (-)
XLOC_010582 CR936322.1 coding upstream 44788 17244908 ~ 17245047 (-)
XLOC_010583 CR936322.2 coding upstream 47102 17247222 ~ 17247363 (-)
XLOC_010584 emg1 coding upstream 54369 17254489 ~ 17258111 (-)
XLOC_010626 CR392024.2 misc upstream 3694992 20895112 ~ 20895175 (-)
XLOC_010568 NA non-coding downstream 585759 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 616309 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 non-coding downstream 659867 16526975 ~ 16529972 (-)
XLOC_010562 NA non-coding downstream 919404 16266556 ~ 16270435 (-)
XLOC_010592 NA non-coding upstream 504710 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 623327 17823447 ~ 17824848 (-)
XLOC_010595 NA non-coding upstream 937522 18137642 ~ 18140068 (-)

Expression


Co-expression Network