XLOC_010580 (wu:fj39g12)


Basic Information

Item Value
gene id XLOC_010580
gene name wu:fj39g12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17204251 ~ 17207754 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020734
GCACTTAGAGGAAGGAAGAGAGAAAGACAGGGATGCTCCTAGCAGGTGCCAAAAACTGAACTGAGACGTGTGAGGGAGAGAGACACAGGATGGAGCAGGACTAAAGCATTCAGTCAGATATTTTATAAGATCCTCAAACTCTCATTGctgAATGCTGGTGTTTGTATTTCCATGCTCCTGTGTTTGAGTATATCTATCTAAATCTTTTCATCTAAATCTATCCACATCCCCTCGCATTAGTGGTGTATCTGGGGCCAATATCACTTGCACTATGCTGTGCTCATCTGTGTTTGTGGTGCTTCTTATCCTTTTGGCCAATCCCGTGCCGGGCAGCACCCGAGCCCTTCACACCTCTGACAAAGCCATGCAGGTCATTGAACAGTTCCTTGAGCGATACAATGACCTTTTAACCCTTGATGATCTTGAAAACCTCACAAGTGACCAATCGGAAGAGCCCGTGCAGACCTTCAGCTCTGGGCTAAAGGTTGCAGAATATCCCAAGTGGATTGACATACCGGTGCAGAATGAGAATGCCTGGCTCCGGCTTTTAAAGGGGGCTTTGGCCAATCAGAAACGAGCTCCACCGGATCGGTTGCGGAGGGGGTGGAACCGAGGCTGTTTTGGCTTGAAACTGGACCGGATCGGCTCTATGAGTGGCCTCGGCTGCTAATGATGAACtcagaaattgatttaaaatgacTGTTGTCCTACTTAGGTTACAAAACTCTGTGCTGGTCTAGTCTGGGACCCTGTGAAAATAGTGT

Function

symbol description
wu:fj39g12 Predicted to enable hormone activity and hormone receptor binding activity. Predicted to be involved in cGMP biosynthetic process and receptor guanylyl cyclase signaling pathway. Predicted to be located in extracellular region. Is expressed in cerebellum; granule cell; hindbrain; hypothalamus; and optic tectum.

GO:

id name namespace
GO:0006182 cGMP biosynthetic process biological_process
GO:0007168 receptor guanylyl cyclase signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0051427 hormone receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7901 Predicted to enable hormone activity and hormone receptor binding activity. Predicted to be involved in cGMP biosynthetic process and receptor guanylyl cyclase signaling pathway. Predicted to be located in extracellular region. Is expressed in cerebellum; granule cell; hindbrain; hypothalamus; and optic tectum.

Ensembl:

ensembl_id ENSDARG00000043460

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020734 True 764 mRNA 0.48 3 17204251 17207754

Neighbor

gene id symbol gene type direction distance location
XLOC_010579 gapdh coding downstream 4131 17189839 ~ 17200120 (-)
XLOC_010578 opn9 coding downstream 15957 17163193 ~ 17188294 (-)
XLOC_010577 iffo1b coding downstream 41408 17121986 ~ 17162843 (-)
XLOC_010576 CU861451.1 coding downstream 84065 17120064 ~ 17120186 (-)
XLOC_010575 si:dkey-260g12.1 coding downstream 87752 17102103 ~ 17116499 (-)
XLOC_010581 nop2 coding upstream 26786 17234540 ~ 17251898 (-)
XLOC_010582 CR936322.1 coding upstream 37154 17244908 ~ 17245047 (-)
XLOC_010583 CR936322.2 coding upstream 39468 17247222 ~ 17247363 (-)
XLOC_010584 emg1 coding upstream 46735 17254489 ~ 17258111 (-)
XLOC_010585 kel coding upstream 55273 17263027 ~ 17300030 (-)
XLOC_010626 CR392024.2 misc upstream 3687358 20895112 ~ 20895175 (-)
XLOC_010568 NA non-coding downstream 600171 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 630721 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 non-coding downstream 674279 16526975 ~ 16529972 (-)
XLOC_010562 NA non-coding downstream 933816 16266556 ~ 16270435 (-)
XLOC_010592 NA non-coding upstream 497076 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 615693 17823447 ~ 17824848 (-)
XLOC_010595 NA non-coding upstream 929888 18137642 ~ 18140068 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_08893013_08893496 NPPCL, ANFC1 misc CI01000016 null 8888833 ~ 8894737 (-)
rainbow trout (Oncorhynchus mykiss) G100901 NA non-coding NC_048565.1 CM023219.2 91611154 ~ 91611575 (-)