XLOC_010581 (nop2)


Basic Information

Item Value
gene id XLOC_010581
gene name nop2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17234540 ~ 17251898 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020735
CGGAAAACCAACGTGTGCTGAAGTCACATGTGCGCGAGTTCACAGCAGTATGAGTGGCACATGTTCTCTGGTAACTTTAGTACATTAAAGCCTCTATATATTTACTGAGTGTTCTAAAGAAGAGTCGGAAAATTTGAGGAACGCGGTTTTGTTAAACTcaGTGCTGTAGCACAACCTTATAAGTGTCAAGCATGGGAAGGAAGTTGGATCCCACTATTAAGGTGAAAAGAGGACCAGGACGTAAGGCCAGGAAACAGAAAGGAGCAGAAACTGAGCTCTCCAAGTTTTTGGCTGATGATGAGGGGCCAAAAAAACTTTCAAGCAGAGCAAGGAAACGagctgcaaagAGAGCCCAGGTTACCAATCAGCTCAAAGAGCCTAAACAAGAGGAAAAGCCCAAAAAAGGTTTTTCTGATGAGAATAAAGAGTGGCTGAAACCTGCACAGAGGAAGCGAAAGATTGAACAATCTGAGGAAGATGAGGATAGTGACAGCCAAtgggaagatgatgatgatgatgatgatgatgatgtcgaTAATGAGCAGACATTTGATCACAAGGATATAAagaatgaagatgatgatgataaagataTGGTTGATGACTATGGTGCTGATGAAGGTGATGAAAAAGACAGCGATGGAGAAGAGCTGCTGCCTATAGAAAAAGCTgcaagaaaacagaaaaaacaaacaagcatgaAACCAgaaagtgatgatgatgatgacgaggaggaggaggaggaggatgacgATGATTACAAAGAAGAGGAAAAGGATGATagtgaggaggaggaagaggatactGTTCAAGCAAATATTGATACCACAGAAAAATTCAAACTTCCTGGTGCTGCAGACAGAGCTAAGGAGGGTCTTTTACCGATGGACCTGAAGACCATCCATCAGAGGATTAAAGATAATGTGGACGTACTGTCTAACTTCAATGAGAAGAGAGAAGAAGGCAAGGAGAGATCTGAGTATCTGTCTCTACTACGTGCCGACCTCTGCACTTATTACAGCTACAACCAGTTCCTCATCAGCAAACTCATGGATCTTTTCTCTCTTTCTGAGCTGATTGATTTTCTTGAGGCCAATGAAGTTCATAGGCCGGTCACCATCAGAACCAATACCCTAAAAACCAGGAGGAGAGACCTGGCTCAGGCTCTGATTAACAGAGGAGTAAACCTGGATCCATTGGGGAAATGGTCAAAAGTGGGGCTGGTTATCTATGACTCCTCTGTTCCCATAGgagCAACTCCTGAATATTTGGCAGGCCATTACATGTTACAAGGCGCATCTTCTTTTTTGCCTGTAATGGCTCTGTCTCCCCAGGAGGGGGAGTCCGTGTTGGATATGAGCGCCGCTCCTGGAGGCAAGACCACTTATATGGCTCAGCTCATGAGGAATACTGGCATGATCGTGGCTAATGACGCAAATGTAGACAGACTGAAGAGTGTGGTGGGAAACATCCATCGCCTCGGTGTCACCAACGCTGTCATATGCAACTATGACGGCAGACAGTTCCCAAAGGTAATGGGAGGATTCGACAGAGTGCTTTTGGATGCTCCTTGCTCAGGTACTGGAGTCATTTCCAAAGATCCAGCAGTGAAAACCGGCAAGGATGAGGCTGATATTCTTCGTTCAGCTCATTTGCAGAAGGAGCTCATTCTGTCTGCTATCGACTCTGTCAATGCTGATTCTCAGACTGGTGGATACCTTGTTTACTGCACATGCTCTATTATGGTGGAAGAGAATGAGTGGGTGGTAGATTATGCTTTGAAGAAGAGAAATGTTAAGCTTGTCCCCACTGGATTGGACTTTGGCAAAGAGGGATTTACCAGATTCAAAGAGAAACGTTTCCATCCTTCTCTTAAACTGTCTCGACGATTCTACCCTCACTCTCACAACATGGATGGGTTTTTTGTGGCCAAGCTAAAGAAGCTGTCTAACACCATCCCTACTGCTCCAAAAGAAACAGAAAATCAAGAAGAATCACTTGTAATGGAGACTGCAGCTTCATCAGAGATGAAAGAACAGAAGCCTGCTTCAACTCCAGAAAAAAGCAGCTTTGAAAAGAAACAGAAATTGAATCCTCAAACATCCAAGCCACTCATCGTTAAAAAGAAAGCTGAGAATAAAAAAACTGgccccaaaaaagccaaaattGCCAAGCTGGATAGTGAAGCTGCAAAAAAGTTTGAGAAACCTAGCAAAAAACAGAAGGGAAAGCAAATGAATGGCAATCCAACAACAGAGGGGATAAAGGAGAAGAAAGAGGGCAGTCCATTcaagaagaaagaaaacaaaaccaaaaagaaGAACCTGCTGAAGAAAAAGAAGAACAGAATGGGGAAAAACAAATTTAAGAAGTTAAAAAGTATGCTTGGACAGCAAGAAAGTGGCCAGTGAACTTTAGTCATCTGACAGTAAATTGACATGGACCTATATGCTCAGGACTGGGATCTGTCAGTGGTTTGACCCAAGACAGTAAGTTAAACCAGTCCCAGCTTGCTGTTGGGGACTCAAAGATCATTCTTTAGTAACTTACACagtgaatttgtgtatttatactgCTTTTCAAGACTGTCAACCTTACTGATTCACCAAGAAGGTTACTTCAACCTTCTTGTGATATAAATgtcataaatgtaaatgtcattgtcTGCTTTTGATTCGTAAACGAAGAAACATTTAACAGAAATGCTGCAAAGAATGTGATATGCCAGTTTTTTTCATtacacttattaaaaaaaaagtaaaaaata
>TCONS_00020736
GACCAACTGCTGTGTTTTTGTAAAGTGGCTAATCTCTTTTTTATTAGCACAGCTGACACACGAGAATAAAAGCAATGTGAAAACATGCACTATTATCTTTCTACAATAACAATTGAAGTGTCAGAATAGGTTTTTAGAGTTTGTGTATAATATGTCTGGTGCAGCTCAGCTCATGAGGAATACTGGCATGATCGTGGCTAATGACGCAAATGTAGACAGACTGAAGAGTGTGGTGGGAAACATCCATCGCCTCGGTGTCACCAACGCTGTCATATGCAACTATGACGGCAGACAGTTCCCAAAGGTAATGGGAGGATTCGACAGAGTGCTTTTGGATGCTCCTTGCTCAGGTACTGGAGTCATTTCCAAAGATCCAGCAGTGAAAACCGGCAAGGATGAGGCTGATATTCTTCGTTCAGCTCATTTGCAGAAGGAGCTCATTCTGTCTGCTATCGACTCTGTCAATGCTGATTCTCAGACTGGTGGATACCTTGTTTACTGCACATGCTCTATTATGGTGGAAGAGAATGAGTGGGTGGTAGATTATGCTTTGAAGAAGAGAAATGTTAAGCTTGTCCCCACTGGATTGGACTTTGGCAAAGAGGGATTTACCAGATTCAAAGAGAAACGTTTCCATCCTTCTCTTAAACTGTCTCGACGATTCTACCCTCACTCTCACAACATGGATGGGTTTTTTGTGGCCAAGCTAAAGAAGCTGTCTAACACCATCCCTACTGCTCCAAAAGAAACAGAAAATCAAGAAGAATCACTTGTAATGGAGACTGCAGCTTCATCAG

Function

symbol description
nop2 Predicted to enable rRNA (cytosine-C5-)-methyltransferase activity. Predicted to be involved in maturation of LSU-rRNA and rRNA base methylation. Predicted to act upstream of or within RNA processing; methylation; and ribosome biogenesis. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; mesoderm; nervous system; neural tube; and pectoral fin. Orthologous to human NOP2 (NOP2 nucleolar protein).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0001510 RNA methylation biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0032259 methylation biological_process
GO:0070475 rRNA base methylation biological_process
GO:0005730 nucleolus cellular_component
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050309-7 Predicted to enable rRNA (cytosine-C5-)-methyltransferase activity. Predicted to be involved in maturation of LSU-rRNA and rRNA base methylation. Predicted to act upstream of or within RNA processing; methylation; and ribosome biogenesis. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; mesoderm; nervous system; neural tube; and pectoral fin. Orthologous to human NOP2 (NOP2 nucleolar protein).

Ensembl:

ensembl_id ENSDARG00000043304

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020735 False 2767 mRNA 0.42 16 17234540 17251898
TCONS_00020736 True 797 lncRNA 0.43 6 17235282 17240838

Neighbor

gene id symbol gene type direction distance location
XLOC_010580 wu:fj39g12 coding downstream 26786 17204251 ~ 17207754 (-)
XLOC_010579 gapdh coding downstream 34420 17189839 ~ 17200120 (-)
XLOC_010578 opn9 coding downstream 46246 17163193 ~ 17188294 (-)
XLOC_010577 iffo1b coding downstream 71697 17121986 ~ 17162843 (-)
XLOC_010576 CU861451.1 coding downstream 114354 17120064 ~ 17120186 (-)
XLOC_010584 emg1 coding upstream 2591 17254489 ~ 17258111 (-)
XLOC_010585 kel coding upstream 11129 17263027 ~ 17300030 (-)
XLOC_010586 zyx coding upstream 50554 17302452 ~ 17347727 (-)
XLOC_010587 clcn1b coding upstream 225254 17477152 ~ 17541890 (-)
XLOC_010588 casp2 coding upstream 296797 17548695 ~ 17578503 (-)
XLOC_010626 CR392024.2 misc upstream 3643214 20895112 ~ 20895175 (-)
XLOC_010568 NA non-coding downstream 630460 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 661010 16573414 ~ 16573530 (-)
XLOC_010565 CR848667.2 non-coding downstream 704568 16526975 ~ 16529972 (-)
XLOC_010562 NA non-coding downstream 964105 16266556 ~ 16270435 (-)
XLOC_010592 NA non-coding upstream 452932 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 571549 17823447 ~ 17824848 (-)
XLOC_010595 NA non-coding upstream 885744 18137642 ~ 18140068 (-)
XLOC_010596 NA non-coding upstream 893519 18145417 ~ 18150006 (-)
XLOC_010597 AL929304.1 non-coding upstream 1117016 18368914 ~ 18372540 (-)

Expression


Co-expression Network