Fish Transcriptome and Expression Database

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model fish

XLOC_010582 (CR936322.1)

Basic Information

Item	Value
gene id	XLOC_010582
gene name	CR936322.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	17244908 ~ 17245047 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020737
CTTCCTGTTTTAGTACCACCCATCTGCTTTTTTTCAAGGTGTGTGGCTATGCTAACAGGATAAAGGAACTCTGTCAAGATCTGAAGAGGTGGTTGGCTACACCCCCTCCACTTCTATATGAATTGGCAGTACATTTATGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083842

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00020737	True	140	snoRNA	0.43	1	17244908	17245047

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010580	wu:fj39g12	coding	downstream	37154	17204251 ~ 17207754 (-)
XLOC_010579	gapdh	coding	downstream	44788	17189839 ~ 17200120 (-)
XLOC_010578	opn9	coding	downstream	56614	17163193 ~ 17188294 (-)
XLOC_010577	iffo1b	coding	downstream	82065	17121986 ~ 17162843 (-)
XLOC_010576	CU861451.1	coding	downstream	124722	17120064 ~ 17120186 (-)
XLOC_010583	CR936322.2	coding	upstream	2175	17247222 ~ 17247363 (-)
XLOC_010584	emg1	coding	upstream	9442	17254489 ~ 17258111 (-)
XLOC_010585	kel	coding	upstream	17980	17263027 ~ 17300030 (-)
XLOC_010586	zyx	coding	upstream	57405	17302452 ~ 17347727 (-)
XLOC_010587	clcn1b	coding	upstream	232105	17477152 ~ 17541890 (-)
XLOC_010626	CR392024.2	misc	upstream	3650065	20895112 ~ 20895175 (-)
XLOC_010568	NA	non-coding	downstream	640828	16593349 ~ 16604080 (-)
XLOC_010567	CR848667.3	non-coding	downstream	671378	16573414 ~ 16573530 (-)
XLOC_010565	CR848667.2	non-coding	downstream	714936	16526975 ~ 16529972 (-)
XLOC_010562	NA	non-coding	downstream	974473	16266556 ~ 16270435 (-)
XLOC_010592	NA	non-coding	upstream	459783	17704830 ~ 17706764 (-)
XLOC_010594	NA	non-coding	upstream	578400	17823447 ~ 17824848 (-)
XLOC_010595	NA	non-coding	upstream	892595	18137642 ~ 18140068 (-)
XLOC_010596	NA	non-coding	upstream	900370	18145417 ~ 18150006 (-)

Expression

Co-expression Network