XLOC_010584 (emg1)


Basic Information

Item Value
gene id XLOC_010584
gene name emg1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17254489 ~ 17258111 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020739
GCGGCGGCCACTCTGATCAAAACTGTTGCTGTGACGCACATTTAAAGCGTCATAGTTCTATGTCAACATGGCTGCACGCGCTGGAGACAAGCGTGGTCTGGAACATTTAGATGAATATGAACCAAAACAAGCTAAACAGCAAAGAAGTTTGCACGATCAGATGACTGAAAAGCGTCTTGTCGTTGTTTTAGAAGGAGCGACGCTTGAAACCGTAAAGGTTGGAAAGACATTTGAGTTGCTGAACTGTGATCAGCACAAGAGTATGATAATAAAGAGTGGCAGAGACCCAGGGAAGATTCGTCCTGATATCACACATCAGTGTCTGTTGATGTTATTGGACAGTCCTTTGAATAGAGCAGGCCTGCTCCAAGTGTACATTCACACAGAGAAGAACGTTTTGATCGAGATCAACCCACAAACAAGAATTCCTCGTACCTTTGCCAgattttgtggactcatggTCCAGCTCCTGCACAAGTTGAGTGTGAGAGCAGCAGACGGCCCTCAGCGTTTGTTAAGACTCATTAAGAATCCAGTGTCAGACCACCTGCCACCTGGATGCCCTCGATTTTCTACATCATTCAAAGCTGGGGATGCTGTATGTCCTAGAACAATTGTGCCAGATGATGGACCTGCCGCCATTGTCATTGGAGCATTTGCACATGGAGCAGTAAATGTCGACTACACAGAGAAGACCGTTTCTATCAGTAACTATCCTCTGTCTGCAGCTTTGGCCTGTGCCAAAATATGTTCAGCATTTGAAGAGGTCTGGGGTGTGTTATGACAAAGCCAAACAGATATGCACTGCCATATTTCTTGCATGATTGAAAAATAGATATTTGGACTGTGTTCTGTAGGTTCATTTGGTCCATTCATTAAAGCACAAATTGTGTCAAATTATGCCATACAAAGATAATCCACATAGAAGCAAGCTATTATAGAGCAAACAGCAAAAAGTGTTAAGAATTGAAAACTAAGTTTCTAACTTTTTGTATAGGTTTATACATTTGATATTTAACTAAGATTTGCCTTTAAGAATCACTTTGCCTTTTTTCTCCTtgcaataaacaacaacaaacaaaaa

Function

symbol description
emg1 Predicted to enable rRNA (pseudouridine) methyltransferase activity and rRNA binding activity. Predicted to be involved in rRNA base methylation. Predicted to act upstream of or within ribosome biogenesis. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Bowen-Conradi syndrome. Orthologous to human EMG1 (EMG1 N1-specific pseudouridine methyltransferase).

GO:

id name namespace
GO:0070475 rRNA base methylation biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005730 nucleolus cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0070037 rRNA (pseudouridine) methyltransferase activity molecular_function
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-060421-2909 Predicted to enable rRNA (pseudouridine) methyltransferase activity and rRNA binding activity. Predicted to be involved in rRNA base methylation. Predicted to act upstream of or within ribosome biogenesis. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Bowen-Conradi syndrome. Orthologous to human EMG1 (EMG1 N1-specific pseudouridine methyltransferase).

Ensembl:

ensembl_id ENSDARG00000056914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020739 True 1084 mRNA 0.42 5 17254489 17258111

Neighbor

gene id symbol gene type direction distance location
XLOC_010581 nop2 coding downstream 2591 17234540 ~ 17251898 (-)
XLOC_010583 CR936322.2 coding downstream 7126 17247222 ~ 17247363 (-)
XLOC_010582 CR936322.1 coding downstream 9442 17244908 ~ 17245047 (-)
XLOC_010580 wu:fj39g12 coding downstream 46735 17204251 ~ 17207754 (-)
XLOC_010579 gapdh coding downstream 54369 17189839 ~ 17200120 (-)
XLOC_010585 kel coding upstream 4916 17263027 ~ 17300030 (-)
XLOC_010586 zyx coding upstream 44341 17302452 ~ 17347727 (-)
XLOC_010587 clcn1b coding upstream 219041 17477152 ~ 17541890 (-)
XLOC_010588 casp2 coding upstream 290584 17548695 ~ 17578503 (-)
XLOC_010589 m6pr coding upstream 320496 17578607 ~ 17586883 (-)
XLOC_010626 CR392024.2 misc upstream 3637001 20895112 ~ 20895175 (-)
XLOC_010576 CU861451.1 non-coding downstream 134303 17120064 ~ 17120186 (-)
XLOC_010568 NA non-coding downstream 650409 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 680959 16573414 ~ 16573530 (-)
XLOC_010592 NA non-coding upstream 446719 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 565336 17823447 ~ 17824848 (-)
XLOC_010595 NA non-coding upstream 879531 18137642 ~ 18140068 (-)
XLOC_010596 NA non-coding upstream 887306 18145417 ~ 18150006 (-)
XLOC_010597 AL929304.1 non-coding upstream 1110803 18368914 ~ 18372540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_08920718_08923668 EMG1 coding CI01000016 null 8920465 ~ 8924048 (-)