G280449


Basic Information

Item Value
gene id G280449
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 898818 ~ 899610 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU317986
TAGTTTAATGATAAATAATGTTTCTTTTCTTTTTCTTTTTTTAAGAAACTGACCATTTTAATGCTTTTAAGTCTTTTTGTATTATTTTTAAAGTCCATGGACTGGAATAGGATTCTGTCTTGTTTTTGTTTACAGGCCTGATTTCCAAACTCTGGTCATTTCAGATATCCTTTATTTATACATTAGACACCAAGTATAGATTAGGAATCAGAAGAATGTACAGAAATAGATGGTAATATATTCTTGATAGTTGGTAATATCGTGCCCGTATGTTATATGTTTGATGCTGCTGTTGATAAACACATTATTTTATGTCCTGGATTGGATGCGTTAATAATTCCAACAATCAGAGAGATTTTTTTTTTTCATTAACAGTAAAGAGATTTTGATTCACCCCCAAAATTACTCTCTGAAAATAAGAAAAAGCTGCGCTTTCAGATGGTTATTTTAATTTGTAGGCTACTTATTGTATATTTAACTCATTTCATTTGTTTCATAATATTCTTTTACTCTTTAAAACAACTTAATCTACTGACCTCAAATATGTAATGAAAAAGAACAAAAATGTATTACTTGATAAGCACACCAGTCATATCTCAATCTGAAGAATCTGCAGTAGCCTAGTCATACTTGGCTTGACAGAAAAAGAAACCTAGTTCTGCTTCAGTGAAGAGAAGTCTGATTCAATTCGCTGAATTGGTTATTTCGATATGGCCTATGTTTTTAATGAATCTTGTTTCAGCAGTTCTTCTGCATCATGTCGTAATAACTCTAAGAACGTTTCAATAAAACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU317986 True 793 lncRNA 0.30 1 898818 899610

Neighbor

gene id symbol gene type direction distance location
CI01000071_00880705_00897817 TRPV4 coding upstream 373 880705 ~ 898445 (+)
CI01000071_00867024_00871868 NA coding upstream 25499 866841 ~ 873319 (+)
CI01000071_00825247_00853236 GIT2A, GIT2 coding upstream 45064 824939 ~ 853754 (+)
CI01000071_00807216_00807677 NA coding upstream 90676 806831 ~ 808142 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 coding upstream 95689 791346 ~ 803317 (+)
CI01000071_00923006_00927912 NA coding downstream 23142 922752 ~ 928488 (+)
CI01000071_00965582_00968758 NA coding downstream 65391 965001 ~ 969361 (+)
CI01000071_00971517_00971823 NA coding downstream 71427 971037 ~ 972217 (+)
CI01000071_01086147_01088260 NA coding downstream 186537 1086147 ~ 1088399 (+)
CI01000071_01113148_01115596 KCTD10 coding downstream 213538 1113148 ~ 1116722 (+)
G280413 NA non-coding upstream 122707 737965 ~ 776111 (+)
G280411 NA non-coding upstream 171448 726653 ~ 727370 (+)
CI01000071_00707882_00708320 NA non-coding upstream 177582 706888 ~ 709581 (+)
G280341 NA non-coding upstream 250162 648064 ~ 648656 (+)
G280477 NA non-coding downstream 3257 902867 ~ 903174 (+)
G280478 NA non-coding downstream 4173 903783 ~ 904013 (+)
G280479 NA non-coding downstream 5022 904632 ~ 904864 (+)
G280505 NA non-coding downstream 41785 941395 ~ 943005 (+)
G280537 NA non-coding downstream 110922 1010532 ~ 1010771 (+)
G280443 NA other downstream 5607 905217 ~ 922096 (+)
CI01000071_01374449_01376813 NA other downstream 474973 1373996 ~ 1377670 (+)
CI01000071_02815324_02834097 NA other downstream 1905034 2815127 ~ 2835525 (+)
G282080 NA other downstream 2156474 3056084 ~ 3056531 (+)

Expression


Co-expression Network