XLOC_010586 (zyx)


Basic Information

Item Value
gene id XLOC_010586
gene name zyx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17302452 ~ 17347727 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020741
AACATCTCCCATTGGCAGTCATCAAAGCTTTGCTCCACCTTCTCCTGCTGCTCCTAAAACATCACCTGTCTCCACGTTCAACAGACCAGCAGGAAACAATGTTCCTTCAAAGGTGTCTGGCTCAGGCACAGGTTCAGGTCCAGGTGGAGCTCCTCTAACTATGAGAGAGGTGGAAGAACTGGAGAAAATGACCAAGGACTTTATTCAACACATGGACAAACATCCTCCTGTGATCACCTCCCCAGCAACAGAGGTGTGTGGTAAATGTGGAGAGACGCTGTCTAGATCTCAGCCAGCAGTGAGAGCAATGGATAAACTCTTCCACTCCCATTGTTTCTGCTGTGTGAGCTGCCAGCGCCCCCTGCAGGGCATGCAGTTCTATGATCGTGATGGCACACCTCAGTGCGAGGAATGCTACATGAGTTCTTTGTCCGTGTGTTCCCGCTGTGGGGAGCGCATCACAGATCGCGTCCTGAAAGCAATGGGTCAGTGTTTTCATGCTCACTGTTTCCTCTGCACCACCTGCAACTGCTCTCTGGAGGGAGCTCCTTTCATCACTGATGACGACAACAAACCCTACTGTGTCAAGGATTACCATCGGATTGCGCTCGCCCCCTTTCCATAGAGGCAGACGCTGATGGCTGTTACCCGCTGAACGGCAAAATCCTGTGCATGAAGTGCCACACCCAACGTAACAAGCAAGCCAAACAGTGATTTGTGGTAAGCTGCCACAAACCCAAAGCAAAATTGAAACagctgtactttaaaaaaaaaaa
>TCONS_00020742
AGATTCACTGGTTGACGTCCCCTCTAGAGCTTCCTAGTTTTAACAGCATGGTGCTTAACGCCTATACAGCAATATAAAGTGGTATAAATTAAGAAAGGATATTCACAAAGAAGGATATTTGTCCATAAAAGCCCCGTAAGGGTTGAAATCAGAGGCGGTTTCTGCATTAGACAATCTGTATCTACTGCTTAACAGCATCTTTTACGAAGAAAACGAACAatCAAGATGTCTGACTCCAGCAGCGGCAAGCCCATTGTGGTCACTTCCTCTGTCTCTCTTAAAGTTACTGCTCCTTCATTTTACAACCAACCCAAAAAGTTTGCATCTGTGGCTCCTCCACGTCCCAAAGCACAGATTGCCCCATCACAGCCTTCATCATTTGTAAGCACTGGTGTAATTGGACGAGTTGGAGAGGTTCCCCCACCCCCCTCATCCCTCAGTTATGACTTTccaccccctcctcctcctccgctgGATGATGCCGAACTCCCAGCCCCACCTCCAGAATGCCAAATCACTCACCCTGTATCTGATGCCCCTCCTTCATTCCCAGCCCCTCCCCCAGTCGCAGAAGACCTTCACCTCCCTCCACCTCCTGAGGAGCTTACCTCTGTTCCTTCTGCCTGCTTCCCTCCACCCCCACCTCCACCTCCTCCTGTCCCTGAAAATGGTGCAGGTATCAACTCGCAGAGGCTGTTCGAGAAACAGACAAGTTTTGATAAGCAGTTAGGCTCTTTGACTGATATGTTATCAGAGATGGAGACTAGTGGACCTTTCAACCCTAAGTTACCCAGCCAATTTTCATCAGCACCAGCACCAAAGCCAGCACCAGGACCACCACCAACCGCCCCAAAGCCTGCCCTTTCCTTTCTACCCCCTCCTGAGCTGCAGGATCATCCTTCTCCTGCTCCATGGGCTGAAGAGCTACGTGCCCGAACACGACCAGCCAATCTGAGCACAGCGTCTGTCCCTGCTCCTGTACAGTCAGTGGCTAAAGGCCCAGCTGTTGCTCCAAAAACCAACTTCCCTCCCAGTCAGCTCAATTCAAATTTGGCTTCCAAAACAGTTAGTCCCGCACCTTCTGGAGGAGCAAGAGGGTTTAACCACACTGTTAAAAGCCCTCCCCAAAGCACTTTTCCACCACCTCCTCCTGCAGCTCCTCCTGCCCCTATTCCTCCGCCAGCCAATATTCCCAAACCTGCTTTCAATCACTCTGAAACATCTCCCATTGGCAGTCATCAAAGCTTTGCTCCACCTTCTCCTGCTGCTCCTAAAACATCACCTGTCTCCACGTTCAACAGACCAGCAGGAAACAATGTTCCTTCAAAGGTGTCTGGCTCAGGCACAGGTTCAGGTCCAGGTGGAGCTCCTCTAACTATGAGAGAGGTGGAAGAACTGGAGAAAATGACCAAGGACTTTATTCAACACATGGACAAACATCCTCCTGTGATCACCTCCCCAGCAACAGAGGTGTGTGGTAAATGTGGAGAGACGCTGTCTAGATCTCAGCCAGCAGTGAGAGCAATGGATAAACTCTTCCACTCCCATTGTTTCTGCTGTGTGAGCTGCCAGCGCCCCCTGCAGGGCATGCAGTTCTATGATCGTGATGGCACACCTCAGTGCGAGGAATGCTACATGAGTTCTTTGTCCGTGTGTTCCCGCTGTGGGGAGCGCATCACAGATCGCGTCCTGAAAGCAATGGGTCAGTGTTTTCATGCTCACTGTTTCCTCTGCACCACCTGCAACTGCTCTCTGGAGGGAGCTCCTTTCATCACTGATGACGACAACAAACCCTACTGTGTCAAGGATTACCATCGCCGTTTCTCTCCACTTTGTGTAAGCTGCAATGAGCCAATTATTCCCGACCCTGGAAGTGAAGAGACAGTCAGAGTTGTTGCCTTAGAGAAGAACTTTCACCTGAAGTGCTACCGATGTGAGGATTGCGCTCGCCCCCTTTCCATAGAGGCAGACGCTGATGGCTGTTACCCGCTGAACGGCAAAATCCTGTGCATGAAGTGCCACACCCAACGTAACAAGCAAGCCAAACAGTGATTTGTGGTAAGCTGCCACAAACCCAAAGCAAAATTGAAACagctgtactttaaaaaaaaaaa
>TCONS_00020743
TTTTTCAGGGGCACAGAGAGGGAGATACAAAAAAGGGAGGCTCAGAGAGAAACAAAAAAGGAGAAGGAGACGGGCTTATAGatCAAGATGTCTGACTCCAGCAGCGGCAAGCCCATTGTGGTCACTTCCTCTGTCTCTCTTAAAGTTACTGCTCCTTCATTTTACAACCAACCCAAAAAGTTTGCATCTGTGGCTCCTCCACGTCCCAAAGCACAGATTGCCCCATCACAGCCTTCATCATTTGTAAGCACTGGTGTAATTGGACGAGTTGGAGAGGTTCCCCCACCCCCCTCATCCCTCAGTTATGACTTTccaccccctcctcctcctccgctgGATGATGCCGAACTCCCAGCCCCACCTCCAGAATGCCAAATCACTCACCCTGTATCTGATGCCCCTCCTTCATTCCCAGCCCCTCCCCCAGTCGCAGAAGACCTTCACCTCCCTCCACCTCCTGAGGAGCTTACCTCTGTTCCTTCTGCCTGCTTCCCTCCACCCCCACCTCCACCTCCTCCTGTCCCTGAAAATGGTGCAGGTATCAACTCGCAGAGGCTGTTCGAGAAACAGACAAGTTTTGATAAGCAGTTAGGCTCTTTGACTGATATGTTATCAGAGATGGAGACTAGTGGACCTTTCAACCCTAAGTTACCCAGCCAATTTTCATCAGCACCAGCACCAAAGCCAGCACCAGGACCACCACCAACCGCCCCAAAGCCTGCCCTTTCCTTTCTACCCCCTCCTGAGCTGCAGGATCATCCTTCTCCTGCTCCATGGGCTGAAGAGCTACGTGCCCGAACACGACCAGCCAATCTGAGCACAGCGTCTGTCCCTGCTCCTGTACAGTCAGTGGCTAAAGGCCCAGCTGTTGCTCCAAAAACCAACTTCCCTCCCAGTCAGCTCAATTCAAATTTGGCTTCCAAAACAGTTAGTCCCGCACCTTCTGGAGGAGCAAGAGGGTTTAACCACACTGTTAAAAGCCCTCCCCAAAGCACTTTTCCACCACCTCCTCCTGCAGCTCCTCCTGCCCCTATTCCTCCGCCAGCCAATATTCCCAAACCTGCTTTCAATCACTCTGAAACATCTCCCATTGGCAGTCATCAAAGCTTTGCTCCACCTTCTCCTGCTGCTCCTAAAACATCACCTGTCTCCACGTTCAACAGACCAGCAGGAAACAATGTTCCTTCAAAGGTGTCTGGCTCAGGCACAGGTTCAGGTCCAGGTGGAGCTCCTCTAACTATGAGAGAGGTGGAAGAACTGGAGAAAATGACCAAGGACTTTATTCAACACATGGACAAACATCCTCCTGTGATCACCTCCCCAGCAACAGAGGTGTGTGGTAAATGTGGAGAGACGCTGTCTAGATCTCAGCCAGCAGTGAGAGCAATGGATAAACTCTTCCACTCCCATTGTTTCTGCTGTGTGAGCTGCCAGCGCCCCCTGCAGGGCATGCAGTTCTATGATCGTGATGGCACACCTCAGTGCGAGGAATGCTACATGAGTTCTTTGTCCGTGTGTTCCCGCTGTGGGGAGCGCATCACAGATCGCGTCCTGAAAGCAATGGGTCAGTGTTTTCATGCTCACTGTTTCCTCTGCACCACCTGCAACTGCTCTCTGGAGGGAGCTCCTTTCATCACTGATGACGACAACAAACCCTACTGTGTCAAGGATTACCATCGCCGTTTCTCTCCACTTTGTGTAAGCTGCAATGAGCCAATTATTCCCGACCCTGGAAGTGAAGAGACAGTCAGAGTTGTTGCCTTAGAGAAGAACTTTCACCTGAAGTGCTACCGATGTGAGGATTGCGCTCGCCCCCTTTCCATAGAGGCAGACGCTGATGGCTGTTACCCGCTGAACGGCAAAATCCTGTGCATGAAGTGCCACACCCAACGTAACAAGCAAGCCAAACAGTGATTTGTGGTAAGCTGCCACAAACCCAAAGCAAAATTGAAACagctgtactttaaaaaaaaaaa

Function

symbol description
zyx Predicted to enable metal ion binding activity. Predicted to be involved in integrin-mediated signaling pathway and transforming growth factor beta receptor signaling pathway. Predicted to be active in cytoplasm; focal adhesion; and stress fiber. Orthologous to human ZYX (zyxin).

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0001725 stress fiber cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04510 Focal adhesion

ZFIN:

id description
ZDB-GENE-070928-18 Predicted to enable metal ion binding activity. Predicted to be involved in integrin-mediated signaling pathway and transforming growth factor beta receptor signaling pathway. Predicted to be active in cytoplasm; focal adhesion; and stress fiber. Orthologous to human ZYX (zyxin).

Ensembl:

ensembl_id ENSDARG00000075733

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020741 False 776 mRNA 0.50 5 17302452 17316440
TCONS_00020742 False 2114 mRNA 0.50 10 17302452 17345377
TCONS_00020743 True 1976 mRNA 0.51 10 17302452 17347727

Neighbor

gene id symbol gene type direction distance location
XLOC_010585 kel coding downstream 2422 17263027 ~ 17300030 (-)
XLOC_010584 emg1 coding downstream 44341 17254489 ~ 17258111 (-)
XLOC_010581 nop2 coding downstream 50554 17234540 ~ 17251898 (-)
XLOC_010583 CR936322.2 coding downstream 55089 17247222 ~ 17247363 (-)
XLOC_010582 CR936322.1 coding downstream 57405 17244908 ~ 17245047 (-)
XLOC_010587 clcn1b coding upstream 129425 17477152 ~ 17541890 (-)
XLOC_010588 casp2 coding upstream 200968 17548695 ~ 17578503 (-)
XLOC_010589 m6pr coding upstream 230880 17578607 ~ 17586883 (-)
XLOC_010590 ccdc106a coding upstream 292169 17639896 ~ 17660594 (-)
XLOC_010591 si:dkey-17m8.1 coding upstream 323574 17671301 ~ 17699111 (-)
XLOC_010626 CR392024.2 misc upstream 3547385 20895112 ~ 20895175 (-)
XLOC_010576 CU861451.1 non-coding downstream 182266 17120064 ~ 17120186 (-)
XLOC_010568 NA non-coding downstream 698372 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 728922 16573414 ~ 16573530 (-)
XLOC_010592 NA non-coding upstream 357103 17704830 ~ 17706764 (-)
XLOC_010594 NA non-coding upstream 475720 17823447 ~ 17824848 (-)
XLOC_010595 NA non-coding upstream 789915 18137642 ~ 18140068 (-)
XLOC_010596 NA non-coding upstream 797690 18145417 ~ 18150006 (-)
XLOC_010597 AL929304.1 non-coding upstream 1021187 18368914 ~ 18372540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_08947581_08961131 ZYX coding CI01000016 null 8946148 ~ 8961131 (-)
tiger barb (Puntius tetrazona) G81512 NA misc NC_056709.1 CM032078.1 12817753 ~ 13057881 (-)
mexican tetra (Astyanax mexicanus) G89690 zyx,LOC108428910 unknown NC_035906.1 CM008309.1 9894825 ~ 9901700 (-)