G280505


Basic Information

Item Value
gene id G280505
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 941395 ~ 943005 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU318043
ACTGACTGCTTCTCAATAAGAAGTCCAGAAAGGAAGTGGCTAAATCCTGCTGAAATTGGAGGGAGGGAATCAATTTAAATCAAGCATGGCGGTCTCCATCTCTTCTGCTCTCTCATTCTTCTTTTCTTTTTCTCTCAAACATGCATTTTCTTTTTTACTTTTCATGCAAAATCATTGAAGCTTCTTATTCATCGGTTCATTCATTTGTCAGTCTACTCATTCATTCTGCCATCCATCTAGCCATTCGTCCATCCACTCATTCATTCATCAATCAATCCATCCATCTGCTCATTCATTCAATCAATTCAACCACCCGCTCATTCATACATCTACCATCTGCTTCTTCACTCATCCATCCATCCGCTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATCCATCCGCTCATTCATTCATTCATCCATCCATCCGCTCATTCATTCATTCATCCATCCATCCATCCATCCATCCATCTGCTCATTCATTCATTCATTGATCCATCTGCTCATTCATTCATTCATTCATCCATCCATCTGCTCATTCATTCATTCATCATCCAGCCGCTCATTCATTCATCCATCCATCCGCTCATTCATCCATCCATCCACTCATTCATTCATTCATTCATCCATCCACTCATTCATTCACCAATCCATTCAATCACCCACTCATTCATACATCTACCATCTGCTTCTTCACTCATCCATCCACTCATTCATCCATCCATCCATCTGCTCATTCATTCATTCATTCATCCATCCATCCATCCGTCCATCCGCTCATTCATTCATTCATTCGTCCATCCGCTCATTCATTCATTCATCCGTCCATCCGCTCATTCATTCATTCATTCATCCGTCCATCCGCTCATTCATTCATTCATTCATCCGTCCATCTGCTCATTCATTCATTCATTCATTCATTCATCCATCCATCTGCTCATTCATTCATTCATCCATCCGCTCATTCATTCATTCATTCATCATCCAGCCGCTCATTCATTCATCCATCCATCTGCTCATTCATTCATTCATCCATCCACTCATTCATTCACCAATCCATTCAATCACCCGCTCATTCATACATCTATCATCTGCTTCTTCACTCATCTATCCACTCATTCATCCATCCATCCAACCATCCATCTACTCATTCATTCATCATCCATCCATCCATCCATCCACCCATGCACCCATCCATCTGCTCATTCATTCTTTCAGCCACTCATTCATTCATTCATCCGCTCATTCATTCATTCATCCATCCATCCATCATCTGCTTATTCATTCATTCAGTCATCCACTCATTCATCCATCCATCCATCATCCATTCATTCATTCATCCCTCCGTTCATTCATTCATCATCCATCCATCCATCCATCCGCTCATTCATTCATTCATCATCCATCCATTCACTCATTCATTCATCCATCCATGTTTTATTGCATTTTGTAAAGATTTATTTTTGGCGTTTGCCTTTTTTGATATAGGATGGTTGGGGGGGAGGGGGGGGTTAAGGGATCAGAAAAAGGTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318043 True 1543 lncRNA 0.41 2 941395 943005

Neighbor

gene id symbol gene type direction distance location
CI01000071_00923006_00927912 NA coding upstream 12907 922752 ~ 928488 (+)
CI01000071_00880705_00897817 TRPV4 coding upstream 42950 880705 ~ 898445 (+)
CI01000071_00867024_00871868 NA coding upstream 68076 866841 ~ 873319 (+)
CI01000071_00825247_00853236 GIT2A, GIT2 coding upstream 87641 824939 ~ 853754 (+)
CI01000071_00807216_00807677 NA coding upstream 133253 806831 ~ 808142 (+)
CI01000071_00965582_00968758 NA coding downstream 21996 965001 ~ 969361 (+)
CI01000071_00971517_00971823 NA coding downstream 28032 971037 ~ 972217 (+)
CI01000071_01086147_01088260 NA coding downstream 143142 1086147 ~ 1088399 (+)
CI01000071_01113148_01115596 KCTD10 coding downstream 170143 1113148 ~ 1116722 (+)
CI01000071_01139373_01146663 FOXN4 coding downstream 196059 1139064 ~ 1146678 (+)
G280479 NA non-coding upstream 36531 904632 ~ 904864 (+)
G280478 NA non-coding upstream 37382 903783 ~ 904013 (+)
G280477 NA non-coding upstream 38221 902867 ~ 903174 (+)
G280449 NA non-coding upstream 41785 898818 ~ 899610 (+)
G280537 NA non-coding downstream 67527 1010532 ~ 1010771 (+)
G280558 NA non-coding downstream 111793 1054798 ~ 1055116 (+)
G280560 NA non-coding downstream 115984 1058989 ~ 1059265 (+)
G280561 NA non-coding downstream 116676 1059681 ~ 1059906 (+)
G280563 NA non-coding downstream 122451 1065456 ~ 1065967 (+)
G280443 NA other upstream 19299 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 138078 791346 ~ 803317 (+)
CI01000071_01374449_01376813 NA other downstream 431578 1373996 ~ 1377670 (+)
CI01000071_02815324_02834097 NA other downstream 1861639 2815127 ~ 2835525 (+)
G282080 NA other downstream 2113079 3056084 ~ 3056531 (+)

Expression


Co-expression Network