G280537


Basic Information

Item Value
gene id G280537
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1010532 ~ 1010771 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU318078
GTTGAAGGGGTGGGGGGTCAGCCTGTCAGTGCTCAGACCATACGCCGCACACTGCATCAAATTGGTCTGCATGGCTGTCGTCCCAGAAGGAAGCCTCTTCTAAAGATGATGCACAAGAAAGCCCGCAAACAGTTTGCTGAAGACAAGCAGACTAAGGACATGGATTACTGGAACCATGTCCTGTGGTCTGATGAGACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU318078 True 240 lncRNA 0.50 1 1010532 1010771

Neighbor

gene id symbol gene type direction distance location
CI01000071_00971517_00971823 NA coding upstream 38315 971037 ~ 972217 (+)
CI01000071_00965582_00968758 NA coding upstream 41171 965001 ~ 969361 (+)
CI01000071_00923006_00927912 NA coding upstream 82044 922752 ~ 928488 (+)
CI01000071_00880705_00897817 TRPV4 coding upstream 112087 880705 ~ 898445 (+)
CI01000071_00867024_00871868 NA coding upstream 137213 866841 ~ 873319 (+)
CI01000071_01086147_01088260 NA coding downstream 75376 1086147 ~ 1088399 (+)
CI01000071_01113148_01115596 KCTD10 coding downstream 102377 1113148 ~ 1116722 (+)
CI01000071_01139373_01146663 FOXN4 coding downstream 128293 1139064 ~ 1146678 (+)
CI01000071_01374449_01376813 NA coding downstream 363225 1373996 ~ 1377670 (+)
CI01000071_01380924_01388813 RANBP1 coding downstream 369787 1380558 ~ 1388948 (+)
G280505 NA non-coding upstream 67527 941395 ~ 943005 (+)
G280479 NA non-coding upstream 105668 904632 ~ 904864 (+)
G280478 NA non-coding upstream 106519 903783 ~ 904013 (+)
G280477 NA non-coding upstream 107358 902867 ~ 903174 (+)
G280449 NA non-coding upstream 110922 898818 ~ 899610 (+)
G280558 NA non-coding downstream 44027 1054798 ~ 1055116 (+)
G280560 NA non-coding downstream 48218 1058989 ~ 1059265 (+)
G280561 NA non-coding downstream 48910 1059681 ~ 1059906 (+)
G280563 NA non-coding downstream 54685 1065456 ~ 1065967 (+)
G280565 NA non-coding downstream 56516 1067287 ~ 1067520 (+)
G280443 NA other upstream 88436 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 207215 791346 ~ 803317 (+)
CI01000071_02815324_02834097 NA other downstream 1793873 2815127 ~ 2835525 (+)
G282080 NA other downstream 2045313 3056084 ~ 3056531 (+)

Expression


Co-expression Network