XLOC_010587 (clcn1b)


Basic Information

Item Value
gene id XLOC_010587
gene name clcn1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17477152 ~ 17541890 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020744
TGCTGTAACACAGGAGTGagactgtttgtttatttttggctcAGTGCGAGCGTGTCGATGGCTGCCGATGCGTCGCAAAGGAAAGCTCTGAGATACCAGCAAACTTTGCTGTATGGAGAATATCGGGAGCAGCTGGGTAATATTTCCAGACGGGAGGCCACGCGTCTGTTGACTGAAAAGCAATGGAAAAGGCATGCAGACAATTCCAAGGCAACCAGGAGAGGCCATGGCAGGGCACATCATGCCAGCTTGGATGTGGGGCCACTGACACCAGGCTTAAGCCCCTCCTCTTCTTTGATAAAGTCACACCCCTATTTCAAATGCCAGGACTGCCTAGCCCGTGTCCAGAGGTATATTGTGACAAAGCTTGGGGAGGACTGGATATTCCTGGTTCTTTTGGGCCTCACTATGGCTTTGGTTAGCTGGAGCATGGATTATGCCAGTGCCAAGAGCATACAAGCATATAAATGGATGTATGGAGAGCTGAAGGGGAATGTGGCTTTGCAGTATCTGGCATGGGTTTCATATCCCATCATCCTCGTCGTTTTTGCATCCCTTTTCTGTCATTTGGTTGCTCCACAAGCTATAGGCTCTGGGATTCCTGAACTGAAGACGATCCTCAGAGGTGTGGTGTTAAAAGAGTATCTGACACTCAAAGCATTCGTGGCTAAAGTCATAGGTCTTACGGCTGGTCTAGGCAGTGGCATGCCTATCGGAAAGGAGGGTCCTTTTGTGCATATTGCCAGTATCTGTGCAGCAGTGCTGAGCAGGGTCATGTCAATCTTCACCGGTGTGTATGAGAACCCCTATGGTTACACAGACATACTGACAGTAGGATGTGCTGTTGGGGTGGGCTGCTGTTTTGGGACTCCCCTTGGAGGTGTGTTGTTCAGTATTGAGGTCACATCAACATACTTTGCTGTGAGGAATTACTGGAGAGGATattttgctgcaacattcagtGCCTTTATATTTCGAGTACTGTCAGTATGGAACAAAGACTCTGtcacaaTAACAGCACTGTTTCGTACAAATTTCCGGATGGATTTTCCCTTTGACCTGCAGGAGCTGCCAGCTTTTGCAATAATCGGgaTCTCATGTGGGTTTCTAGGGGCGTTCTTTGTCTATCTGAACAGACAAGTTGTTCTGATCATGAGGAGGCCGACAGCTCTAACACGCTTTCTCACAAAACAcCGTCTGATTTACCCTGGTGCCGTGACACTAATTATAGCATCCTTCACATTTCCTCCTGGTTTTGGACAGTTCATGGCTGGAGAGctgatgcccagAGAGTGCATTAATTCACTATTTGATAACTACACTTGGACAAAGATCTGGGGTTCACCAGTCCCACCTGGATTGGGTCGATCTGCTGCCTGGCTTCACCCACAAGTCAGCGTCTTTGTCATCCTTCTCCTCTTCTTTGTCATGAAGTTCTGGATGTCTGCAGTCTCTACAACAATGCCAGTTCCTTCTGGAGCTTTCATGCCTGTTTTTATATTGGGAGCGGCATTCGGTCGTTTGGTGGGTGAGATCATGGCTACACTTTTCCCCAATGGAATTCTGTTTGATGGAATTGTCTATCAAATCCTTCCTGGAGGCTATGCAGTGATAGGGGCAGCAGCTATGACAGGAGCAGTCACACATACAGTTTCAACAGCAGTGATCTGTTTCGAACTGACAGGCCAAATCTCACACATCCTACCCATGATGGTGGCAGTGATTCTCGCCAACATGGTAGCCCAGGGTTTACAGCCTTCTCTTTATGACTCCATCATTCAGGTCAAAAAGCTGCCATATCTTCCAGAGCTCGGCATCGGTCACATCAGTAAATATAATATCTTTGTGGAGGACATCATGGTGAAGAAAATAAAGTTTCTGTCACCTCAGTCTACTTACAGAGAGCTGAAAGATCTCCTGGAGTCCACGTCTCTTAAAACCATCCCGCTCATTGATTCCAAAGATACAATGATTCTGTTGGGTTCCATTGAAAGATGTGAACTTCAGGCTGCTCTTGATTGGTGGCTGTCAGCTGAGAGGCGGGTTTATAACCGAGGTGAAGGCATGGCCAGCCTAGTGTCGGAGGGCAGCTGGGAGTCCTTTGTCTTTGTGGATGAGGAGGTTGGAGAGGAGAATAGAGACAAGGGTAACCGAGTCTCTGAAGAGTGTAATGGCCCAGTAGGGTCATCTAAAACCACAGACATCTCCACTAATCACACCACATCTGGAGCCTTAAAGTCCATGAGGAGGACTTTTCAACGTCTTTTCTCTTCATCTTCTTCATCAGGGCAAACTAAGCCTGAGAGTCCTGCAGCTCCACCTGTAGTTGATAACATGACCCCTGAAGAGATCAAAGCCTGGGAAGAGAAAGAGCTGGATAAGCCGATTGGCATTGATCAGATCCGTGTTGACCCGTCACCTTTTCAGCTGGTGGAAAGAACATCTTTGCATAAGactCACACATTGTTCTCTCTACTGGGTCTCAGTCATGCATATGTAACCAGTATTGGTAAACTGGTTGGGGTGGTCGCACTAAAGGAGCTCCAGAAAGCAATCGAAGGTTCAACACGCAGCGGTGTGCGACTGCGTCCCCCTTTGGCCAGTTTCAGAGATGCAAGacgaaaaacaaaaaaaccttcTCATTCCCCTTCTATCCCATCCTCTCCCACACAGGACATAGAGTTATGGAGTGAGGCAGTTagaagagaaagtaaagaggagTCTGCTGGCAGTTGTATTCAGACAGTTGAGAAAGAGTGTGAGAGCAGCAGAAATATAGTGAGCACCTCTGAGGAGCAGCTGCCTTCCTCTTCTACAGTCCCTCTCTCCTCACTTCATTCTGTGCCTGGAGGAGAGGGCGATGCTGAAAAAGAGAGAGATGAGGAGCCGTTATAGATCTTTTGTccataatattttcatattatgcTGCACCATCAGACTTTCTGACTGATTCTCAACTGTCTGGACTGGAATTTATTAATTCtcttttttctaaatgtttttattcagttatttttctcttttttctctctctctttattcgTACAAACTGTATGGACGGTCGTTTGACACATCACACTAAATGTCTTCCCTATGTTTGCCAATTTGTCACCTTACCTTTGCGACTGTACATGATCTgagctttaaaaacattttgtcttTGTGTTGGCTGTAGTCAGGTTTATTCAACAatactaaatgttttatttcatcttGCAGATTTTAGGTTgcgtaattttaaaaaattttttgtgTAAAATTTCTAATTAATTTTCTAGGTTCTGTACAAGTTCGGTTTAATCTTGTTATATTGTTGACTTAAAATATTAACCTTTAGCCAGTATTGGGcatgttactttaaaaagtaattatataTAGCTACTCGTTAATAATTAAATTACCacattataaaagtaaataattactTGAGAAAAAAACTGTCGTGTTATGtgtatggcaaaaaaaaatttggATGCCCCCTATAGTATACATGTTAAaggaaaagaaataataaatttaatggaATAAATTATTAGAATATGTTGCACACTATTTTGTACTATGATAATGTTAATGTGGGACAATGTGAAAGACAccaatcaaatattttatttcaaaaattttaatatcaatattttattatacatgCTATCGTTTCTTTAGTGGAACAGCAGCACATAATAGAtgctttaaaaattttaatattacacAGTTTGAAACTTTGTAAAAGTTGAAAAAGTTACTAAGAGAGTCTGTGTTATGCCAACATGTATAGAGAGATGTAgttatagtgctcagcataactaagtacagccc
>TCONS_00020745
ATGGAAAAGGCATGCAGACAATTCCAAGGCAACCAGGAGAGGCCATGGCAGGGCACATCATGCCAGCTTGGATGTGGGGCCACTGACACCAGGCTTAAGCCCCTCCTCTTCTTTGATAAAGTCACACCCCTATTTCAAATGCCAGGTATTCAGTGTCAGTTGCCATTTTATTGTGTTACAGACTGCCTAGCCCGTGTCCAGAGGTATATTGTGACAAAGCTTGGGGAGGACTGGATATTCCTGGTTCTTTTGGGCCTCACTATGGCTTTGGTTAGCTGGAGCATGGATTATGCCAGTGCCAAGAGCATACAAGCATATAAATGGATGTATGGAGAGCTGAAGGGGAATGTGGCTTTGCAGTATCTGGCATGGGTTTCATATCCCATCATCCTCGTCGTTTTTGCATCCCTTTTCTGTCATTTGGTTGCTCCACAAGCTATAGGCTCTGGGATTCCTGAACTGAAGACGATCCTCAGAGGTGTGGTGTTAAAAGAGTATCTGACACTCAAAGCATTCGTGGCTAAAGTCATAGGTCTTACGGCTGGTCTAGGCAGTGGCATGCCTATCGGAAAGGAGGGTCCTTTTGTGCATATTGCCAGTATCTGTGCAGCAGTGCTGAGCAGGGTCATGTCAATCTTCACCGGTGTGTATGAGAACCCCTATGGTTACACAGACATACTGACAGTAGGATGTGCTGTTGGGGTGGGCTGCTGTTTTGGGACTCCCCTTGGAGGTGTGTTGTTCAGTATTGAGGTCACATCAACATACTTTGCTGTGAGGAATTACTGGAGAGGATattttgctgcaacattcagtGCCTTTATATTTCGAGTACTGTCAGTATGGAACAAAGACTCTGtcacaaTAACAGCACTGTTTCGTACAAATTTCCGGATGGATTTTCCCTTTGACCTGCAGGAGCTGCCAGCTTTTGCAATAATCGGgaTCTCATGTGGGTTTCTAGGGGCGTTCTTTGTCTATCTGAACAGACAAGTTGTTCTGATCATGAGGAGGCCGACAGCTCTAACACGCTTTCTCACAAAACAcCGTCTGATTTACCCTGGTGCCGTGACACTAATTATAGCATCCTTCACATTTCCTCCTGGTTTTGGACAGTTCATGGCTGGAGAGctgatgcccagAGAGTGCATTAATTCACTATTTGATAACTACACTTGGACAAAGATCTGGGGTTCACCAGTCCCACCTGGATTGGGTCGATCTGCTGCCTGGCTTCACCCACAAGTCAGCGTCTTTGTCATCCTTCTCCTCTTCTTTGTCATGAAGTTCTGGATGTCTGCAGTCTCTACAACAATGCCAGTTCCTTCTGGAGCTTTCATGCCTGTTTTTATATTGGGAGCGGCATTCGGTCGTTTGGTGGGTGAGATCATGGCTACACTTTTCCCCAATGGAATTCTGTTTGATGGAATTGTCTATCAAATCCTTCCTGGAGGCTATGCAGTGATAGGGGCAGCAGCTATGACAGGAGCAGTCACACATACAGTTTCAACAGCAGTGATCTGTTTCGAACTGACAGGCCAAATCTCACACATCCTACCCATGATGGTGGCAGTGATTCTCGCCAACATGGTAGCCCAGGGTTTACAGCCTTCTCTTTATGACTCCATCATTCAGGTCAAAAAGCTGCCATATCTTCCAGAGCTCGGCATCGGTCACATCAGTAAATATAATATCTTTGTGGAGGACATCATGGTGAAGAAAATAAAGTTTCTGTCACCTCAGTCTACTTACAGAGAGCTGAAAGATCTCCTGGAGTCCACGTCTCTTAAAACCATCCCGCTCATTGATTCCAAAGATACAATGATTCTGTTGGGTTCCATTGAAAGATGTGAACTTCAGGCTGCTCTTGATTGGTGGCTGTCAGCTGAGAGGCGGGTTTATAACCGAGGTGAAGGCATGGCCAGCCTAGTGTCGGAGGGCAGCTGGGAGTCCTTTGTCTTTGTGGATGAGGAGGTTGGAGAGGAGAATAGAGACAAGGTTAGTACATCTTCAAatAGTCCTGCAGCTCCACCTGTAGTTGATAACATGACCCCTGAAGAGATCAAAGCCTGGGAAGAGAAAGAGCTGGATAAGCCGATTGGCATTGATCAGATCCGTGTTGACCCGTCACCTTTTCAGCTGGTGGAAAGAACATCTTTGCATAAGactCACACATTGTTCTCTCTACTGGGTCTCAGTCATGCATATGTAACCAGTATTGGTAAACTGGTTGGGGTGGTCGCACTAAAGGAGCTCCAGAAAGCAATCGAAGGTTCAACACGCAGCGGTGTGCGACTGCGTCCCCCTTTGGCCAGTTTCAGAGATGCAAGacgaaaaacaaaaaaaccttcTCATTCCCCTTCTATCCCATCCTCTCCCACACAGGACATAGAGTTATGGAGTGAGGCAGTTagaagagaaagtaaagaggagTCTGCTGGCAGTTGTATTCAGACAGTTGAGAAAGAGTGTGAGAGCAGCAGAAATATAGTGAGCACCTCTGAGGAGCAGCTGCCTTCCTCTTCTACAGTCCCTCTCTCCTCACTTCATTCTGTGCCTGGAGGAGAGGGCGATGCTGAAAAAGAGAGAGATGAGGAGCCGTTATAG

Function

symbol description
clcn1b Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in muscle. Human ortholog(s) of this gene implicated in myotonia congenita. Orthologous to human CLCN1 (chloride voltage-gated channel 1).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006821 chloride transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100921-11 Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in muscle. Human ortholog(s) of this gene implicated in myotonia congenita. Orthologous to human CLCN1 (chloride voltage-gated channel 1).

Ensembl:

ensembl_id ENSDARG00000012269

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020744 False 3816 mRNA 0.43 23 17477152 17541890
TCONS_00020745 True 2607 mRNA 0.47 20 17478073 17525322

Neighbor

gene id symbol gene type direction distance location
XLOC_010586 zyx coding downstream 129425 17302452 ~ 17347727 (-)
XLOC_010585 kel coding downstream 177122 17263027 ~ 17300030 (-)
XLOC_010584 emg1 coding downstream 219041 17254489 ~ 17258111 (-)
XLOC_010581 nop2 coding downstream 225254 17234540 ~ 17251898 (-)
XLOC_010588 casp2 coding upstream 6805 17548695 ~ 17578503 (-)
XLOC_010589 m6pr coding upstream 36717 17578607 ~ 17586883 (-)
XLOC_010590 ccdc106a coding upstream 98006 17639896 ~ 17660594 (-)
XLOC_010591 si:dkey-17m8.1 coding upstream 129411 17671301 ~ 17699111 (-)
XLOC_010592 NA coding upstream 162940 17704830 ~ 17706764 (-)
XLOC_010626 CR392024.2 misc upstream 3353222 20895112 ~ 20895175 (-)
XLOC_010583 CR936322.2 non-coding downstream 229789 17247222 ~ 17247363 (-)
XLOC_010582 CR936322.1 non-coding downstream 232105 17244908 ~ 17245047 (-)
XLOC_010576 CU861451.1 non-coding downstream 356966 17120064 ~ 17120186 (-)
XLOC_010568 NA non-coding downstream 873072 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 903622 16573414 ~ 16573530 (-)
XLOC_010594 NA non-coding upstream 281557 17823447 ~ 17824848 (-)
XLOC_010595 NA non-coding upstream 595752 18137642 ~ 18140068 (-)
XLOC_010596 NA non-coding upstream 603527 18145417 ~ 18150006 (-)
XLOC_010597 AL929304.1 non-coding upstream 827024 18368914 ~ 18372540 (-)

Expression


Co-expression Network