Gene
RNA
| Item | Value |
|---|---|
| gene id | G280563 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000071 |
| NCBI id | null |
| chromosome length | 5214881 |
| location | 1065456 ~ 1065967 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU318106 | True | 512 | lncRNA | 0.43 | 1 | 1065456 | 1065967 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000071_00971517_00971823 | NA | coding | upstream | 93239 | 971037 ~ 972217 (+) |
| CI01000071_00965582_00968758 | NA | coding | upstream | 96095 | 965001 ~ 969361 (+) |
| CI01000071_00923006_00927912 | NA | coding | upstream | 136968 | 922752 ~ 928488 (+) |
| CI01000071_00880705_00897817 | TRPV4 | coding | upstream | 167011 | 880705 ~ 898445 (+) |
| CI01000071_00867024_00871868 | NA | coding | upstream | 192137 | 866841 ~ 873319 (+) |
| CI01000071_01086147_01088260 | NA | coding | downstream | 20180 | 1086147 ~ 1088399 (+) |
| CI01000071_01113148_01115596 | KCTD10 | coding | downstream | 47181 | 1113148 ~ 1116722 (+) |
| CI01000071_01139373_01146663 | FOXN4 | coding | downstream | 73097 | 1139064 ~ 1146678 (+) |
| CI01000071_01374449_01376813 | NA | coding | downstream | 308029 | 1373996 ~ 1377670 (+) |
| CI01000071_01380924_01388813 | RANBP1 | coding | downstream | 314591 | 1380558 ~ 1388948 (+) |
| G280561 | NA | non-coding | upstream | 5550 | 1059681 ~ 1059906 (+) |
| G280560 | NA | non-coding | upstream | 6191 | 1058989 ~ 1059265 (+) |
| G280558 | NA | non-coding | upstream | 10340 | 1054798 ~ 1055116 (+) |
| G280537 | NA | non-coding | upstream | 54685 | 1010532 ~ 1010771 (+) |
| G280505 | NA | non-coding | upstream | 122451 | 941395 ~ 943005 (+) |
| G280565 | NA | non-coding | downstream | 1320 | 1067287 ~ 1067520 (+) |
| G280568 | NA | non-coding | downstream | 8894 | 1074861 ~ 1075309 (+) |
| G280546 | NA | non-coding | downstream | 23473 | 1089440 ~ 1089716 (+) |
| G280599 | NA | non-coding | downstream | 43260 | 1109227 ~ 1110463 (+) |
| G280614 | NA | non-coding | downstream | 141308 | 1207275 ~ 1207574 (+) |
| G280443 | NA | other | upstream | 143360 | 905217 ~ 922096 (+) |
| CI01000071_00792254_00802384 | SLC6A4B, SLC6A4 | other | upstream | 262139 | 791346 ~ 803317 (+) |
| CI01000071_02815324_02834097 | NA | other | downstream | 1738677 | 2815127 ~ 2835525 (+) |
| G282080 | NA | other | downstream | 1990117 | 3056084 ~ 3056531 (+) |
